View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8465_high_2 (Length: 443)

Name: NF8465_high_2
Description: NF8465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8465_high_2
NF8465_high_2
[»] chr1 (2 HSPs)
chr1 (166-443)||(33987368-33987645)
chr1 (1-166)||(33987128-33987293)
[»] chr2 (15 HSPs)
chr2 (166-384)||(8974165-8974383)
chr2 (238-443)||(9020231-9020437)
chr2 (285-442)||(8995828-8995986)
chr2 (285-443)||(8987895-8988053)
chr2 (284-443)||(9026206-9026366)
chr2 (167-246)||(8987815-8987894)
chr2 (167-246)||(8995748-8995827)
chr2 (87-166)||(8991782-8991861)
chr2 (87-166)||(9020042-9020121)
chr2 (87-169)||(8995614-8995696)
chr2 (315-356)||(9014897-9014938)
chr2 (194-245)||(9026154-9026205)
chr2 (87-144)||(8984463-8984520)
chr2 (87-134)||(8973987-8974034)
chr2 (122-166)||(8972980-8973024)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 166 - 443
Target Start/End: Original strand, 33987368 - 33987645
Alignment:
Q  166 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 265  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987368 agtttataaactaaaaagtaaatgcaacaatgcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 33987467  T
Q  266 ctcagccacaaaataaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 365  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987468 ctcagccaccaaaaaaatcacaagaaataaattgttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttga 33987567  T
Q  366 aattgatcagccaaaactgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagctg 443  Q
    ||||||||| ||||||||||| ||||||||| ||||| |||  ||| | ||||||||||||||| |||||||||||||    
T  33987568 aattgatcaaccaaaactgtataagttttaaattgccgaaatgtctacgttattaaaaactccataaaacaatagctg 33987645  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33987128 - 33987293
Alignment:
Q  1 cttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaatgtctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987128 cttgtttccaattcagaagaggtattatttcctttgcttcactttgctgcattttagtcctttctctctttgctgtatttttatccttttctaatgtctg 33987227  T
Q  101 caaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33987228 caaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgctatga 33987293  T

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Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 166 - 384
Target Start/End: Original strand, 8974165 - 8974383
Alignment:
Q  166 agtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaattttgatctctgaggaggg 265  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  8974165 agttcataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagctatttctattttgaccctttagcagaattttgatctctgaggaggg 8974264  T
Q  266 ctcagccacaaaataaatcacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttg 364  Q
      || || | ||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  8974265 accaacctccaaa-aaaacacaagaaataaattgcttaacctgcaacaaaggcataaactattttgcagaaacttcatttttcaaataaattcttgtttg 8974363  T
Q  365 aaattgatcagccaaaactg 384  Q
    |||||||||| |||||||||    
T  8974364 aaattgatcaaccaaaactg 8974383  T

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Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 238 - 443
Target Start/End: Original strand, 9020231 - 9020437
Alignment:
Q  238 ttagcagaattttgatctctgaggagggctcagccacaaaataaat-cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaa 335  Q
    ||||||| |||||||||||||||| ||| ||||||| |||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9020231 ttagcagtattttgatctctgaggggggatcagccataaaaaaaaaacacaagaaataaattgcttaacctgcaacaaaggcataaattattttgcagaa 9020330  T
Q  336 acttgatttttcaaataaattcctgtttgaaattgatcagccaaaactgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaac 435  Q
    |||| |||||||||||||||||||||||||||||||| | ||||||||||| | | |||||||||||||||  ||| |||||||||||||||||||||||    
T  9020331 actttatttttcaaataaattcctgtttgaaattgattaaccaaaactgtatatg-tttaatttgccaaaatgtctacattattaaaaactccacaaaac 9020429  T
Q  436 aatagctg 443  Q
    ||||||||    
T  9020430 aatagctg 9020437  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 285 - 442
Target Start/End: Original strand, 8995828 - 8995986
Alignment:
Q  285 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcagccaaaact 383  Q
    ||||||||||||||| ||||||||||||||   |||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||||||||    
T  8995828 acaagaaataaattgcttaacctgcaacaataacataaattattttgtagaaactctatttttcaaataaattcctatttgaaattgatcaaccaaaact 8995927  T
Q  384 gtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagct 442  Q
    ||| |||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||    
T  8995928 gtataagttttaatttgccaaaatgtctacattattaaaaactccacataacaatagct 8995986  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 285 - 443
Target Start/End: Original strand, 8987895 - 8988053
Alignment:
Q  285 acaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcagccaaaact 383  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||  ||||||||||||| ||||| |||||||||||||| ||||||||    
T  8987895 acaagaaataaattgcttaacctgcaacaatgacataaattattttgtagaaactctatttttcaaataagttcctatttgaaattgatcaaccaaaact 8987994  T
Q  384 gtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagctg 443  Q
    ||  ||||||||||||||| |||  ||| ||||||| |||||||||||||||||||||||    
T  8987995 gtgtaagttttaatttgccgaaatgtctacattatt-aaaactccacaaaacaatagctg 8988053  T

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Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 284 - 443
Target Start/End: Original strand, 9026206 - 9026366
Alignment:
Q  284 cacaagaaataaattg-ttaacctgcaacaaaggcataaattattttgcagaaacttgatttttcaaataaattcctgtttgaaattgatcagccaaaac 382  Q
    |||||||||||||||| ||  |||||||||| | |||||||||||||| |||||||  |||||||||||||||  || |||||||||||| | |||||||    
T  9026206 cacaagaaataaattgcttctcctgcaacaatgacataaattattttgtagaaactctatttttcaaataaatatctatttgaaattgattaaccaaaac 9026305  T
Q  383 tgtagaagttttaatttgccaaaagatctgcattattaaaaactccacaaaacaatagctg 443  Q
    |||| |||| |||||||||| |||  | | |||||||||||||||||||||||||||||||    
T  9026306 tgtataagtcttaatttgccgaaatgtttacattattaaaaactccacaaaacaatagctg 9026366  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 8987815 - 8987894
Alignment:
Q  167 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8987815 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8987894  T

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Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 8995748 - 8995827
Alignment:
Q  167 gtttataaactaaaaagtaaatgcaacaattcagctaaattaagttgaatagccatttctatttcgaccctttagcagaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||    
T  8995748 gtttataaactaaaaagtaaatgcaacaattcagctaaatttagttgaacaaccatttctatttcgacactttagcagaa 8995827  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 8991782 - 8991861
Alignment:
Q  87 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 166  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||| | ||||| ||||||||||||    
T  8991782 ttttctaatgtctgcatataatgctgcagacttgacttgattgtttctagaaatggtgccagtgcagtgacttgttatga 8991861  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 9020042 - 9020121
Alignment:
Q  87 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 166  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||| |||||  |||| ||||||    
T  9020042 ttttctaatgtctgcatatgatgctgcatacttgacttgattgtttctagaagtgctgcaaatgcagtcactttttatga 9020121  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 8995614 - 8995696
Alignment:
Q  87 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtgcaactgcagcgacttgttatgagtt 169  Q
    ||||||||| || | | |||||||||||||||||||||||| ||||||||||  ||| ||||||||| |||||||||||||||    
T  8995614 ttttctaatttcagtatatgatgctgcagacttgacttgattgtttctagaaacggtccaactgcagtgacttgttatgagtt 8995696  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 9014897 - 9014938
Alignment:
Q  315 ggcataaattattttgcagaaacttgatttttcaaataaatt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9014897 ggcataaattattttgcagaaacttgatttttcaaataaatt 9014938  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 9026154 - 9026205
Alignment:
Q  194 aattcagctaaattaagttgaatagccatttctatttcgaccctttagcaga 245  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  9026154 aattcagctaaatttagttgaacaaccatttctatttcgaccctttagcaga 9026205  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 8984463 - 8984520
Alignment:
Q  87 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttctagaagtggtg 144  Q
    ||||||||||||| || ||||||||||| ||| |||||||| ||||||||||||||||    
T  8984463 ttttctaatgtcttcatatgatgctgcaaactagacttgattgtttctagaagtggtg 8984520  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 8973987 - 8974034
Alignment:
Q  87 ttttctaatgtctgcaaatgatgctgcagacttgacttgatcgtttct 134  Q
    |||||||||||||| | ||||||||||||||||||||| || ||||||    
T  8973987 ttttctaatgtctgtatatgatgctgcagacttgacttcattgtttct 8974034  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 8972980 - 8973024
Alignment:
Q  122 cttgatcgtttctagaagtggtgcaactgcagcgacttgttatga 166  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||    
T  8972980 cttgattgtttctagaaatggtgcaagtgcagtgacttgttatga 8973024  T

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