View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8465_low_3 (Length: 428)
Name: NF8465_low_3
Description: NF8465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8465_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 48949660 - 48949257
Alignment:
| Q |
13 |
gttattgctcatcaaacatgtaatgttgttttagtttgatgacagtggaaacaagtttaattatactcaataagcatgtaatttccttctcagtttggca |
112 |
Q |
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| T |
48949660 |
gttattgctcatcaaacatgtaatgttgttttagtttgataacagtggaaacaagtttaattatactcaataagcatgtaatttccttctcagtttggca |
48949561 |
T |
|
| Q |
113 |
tgtgacttgggaagtcagtgtagtgcctaggggttggaccaaattattttcatttttgcatctcaaggggtaaggggaaagcgttgaggtcgtaaatttg |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48949560 |
tgtggcttgggaagtcagtgtagtgcctaggggttggaccaaattattttcatttttgcatctcaaggggtaaggggaaagcgttggagtcgtaaatttg |
48949461 |
T |
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| Q |
213 |
catgctatgttttggtctgtttgggatgcaatgaataagactatattgtttaggtatggtggctacggtatcagaagtctttgacagattaaatttatgt |
312 |
Q |
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| T |
48949460 |
catgctatgttttggtctgtttgggatgcaatgaataagactatattgtttaggtatggtggctacggtatcagaagtctttgacagattaaatttatgt |
48949361 |
T |
|
| Q |
313 |
cctggaaaatggtctttggctaggaaaaaggggggacattgtttattttatgcttaggggtgagaaacaccatgcatcaatttatttagtggttgtttgg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48949360 |
cctggaaaatggtctttggctaggaaaaaggggggacattgtttattttatgcttaggggtgagaaacatcatgcatcaatttatttagtggttgtttgg |
48949261 |
T |
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| Q |
413 |
ttct |
416 |
Q |
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|||| |
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| T |
48949260 |
ttct |
48949257 |
T |
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