View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8465_low_4 (Length: 385)
Name: NF8465_low_4
Description: NF8465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8465_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 29561221 - 29561548
Alignment:
| Q |
19 |
agaactgatcagcattcattcaagcgattagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca |
118 |
Q |
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|||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
29561221 |
agaactaatcagcgttcattcaagtgataagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattctgctgcctcgtca |
29561320 |
T |
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| Q |
119 |
acaacgacgagttgtttccaatgtcttggaacggcattcgctttggaaccagtaatccacctctagcagcatgnnnnnnnctttctccattccttaaaac |
218 |
Q |
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|||| || |||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
29561321 |
acaatgaagagttgttcccaatgtcttggaacggcattcgttttggaactagtagtccacctctagcagcatgtgtttttctttctccattccttaaaac |
29561420 |
T |
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| Q |
219 |
ctcactgtgttttctgttttctgtaacattactacttttctcctttgagctgcaaactactattcgcttctcaaactctttctgtgtatccaatggaacc |
318 |
Q |
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||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561421 |
ctcaccgtgttttctgttttctgtaacattgctacttttttcctttgagctgcaaattactattcgcttctcaaactctttctgtgtatccaatggaacc |
29561520 |
T |
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| Q |
319 |
ggtggacatttcgtccccttaactacat |
346 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29561521 |
ggtggacatttcgtccccttaactacat |
29561548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 29557421 - 29557541
Alignment:
| Q |
19 |
agaactgatcagcattcattcaagcgattagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatca |
118 |
Q |
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|||||| ||||||||||||||||| | | ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| | || ||| |||||| |
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| T |
29557421 |
agaacttatcagcattcattcaagtgctaagttt-ctcagcatttgaagaaatatggcaatgcaaagagaaaactgctttgccactctg-tgcttcatca |
29557518 |
T |
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| Q |
119 |
acaacgacgagttgtttccaatg |
141 |
Q |
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|||| |||||||| ||||||||| |
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| T |
29557519 |
acaatgacgagttatttccaatg |
29557541 |
T |
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