View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8465_low_6 (Length: 313)
Name: NF8465_low_6
Description: NF8465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8465_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 52730034 - 52730317
Alignment:
| Q |
15 |
cagagaggcgagccggatacttcttaaggacaggtgcttgcaacaccagccaaccagaccatgacaaacaatgtcctataaggtacaaacatccaagggt |
114 |
Q |
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| T |
52730034 |
cagagaggcgagccggatacttcttaaggacaggtgcttgcaacaccagccaaccagaccatgacaaacaatgtcctataaggtacaaacatccaagggt |
52730133 |
T |
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| Q |
115 |
ccagttttttccttttgcatctcccaatcccagtgatgatgatgagattgagattgagtcactgccaccattaataataatgctgtttagaggtggaact |
214 |
Q |
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| T |
52730134 |
ccagttttttccttttgcatctcccaatcccagtgatgatgatgaaattgagattgactcactgccaccattaataataatgctgtttagaggtggaact |
52730233 |
T |
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| Q |
215 |
ggactgtatattgttggacctttgtatagtgtaattactgatgctcctgcaacacaaaacaatgttcctgccacctttcctatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52730234 |
ggactgtatattgttggacctttgtatagtgtaattactgatgctcctgcaacacaaaacaatgttcctgccacctttcctatt |
52730317 |
T |
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Back To:
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 7368860 - 7368972
Alignment:
| Q |
23 |
cgagccggatacttcttaaggacaggtgcttgcaacaccagccaaccagaccatgacaaacaatgtcctataaggtacaaacatccaagggtccagtttt |
122 |
Q |
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||||| || ||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||| || || || | ||||||||| ||||| |||| |
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| T |
7368860 |
cgagcagggtacttcttaaggacaggtgcttgaaacacaagccaagcagaccaagacaaacaatgtccaattagataaagacatccaagtgtccaatttt |
7368959 |
T |
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| Q |
123 |
ttccttttgcatc |
135 |
Q |
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|||| || ||||| |
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| T |
7368960 |
ttcccttagcatc |
7368972 |
T |
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