View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8465_low_7 (Length: 305)

Name: NF8465_low_7
Description: NF8465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8465_low_7
NF8465_low_7
[»] chr1 (1 HSPs)
chr1 (21-277)||(33987702-33987960)
[»] chr2 (13 HSPs)
chr2 (27-267)||(9020506-9020746)
chr2 (24-267)||(8988097-8988341)
chr2 (39-267)||(9026436-9026667)
chr2 (39-263)||(9031707-9031934)
chr2 (45-206)||(9023133-9023294)
chr2 (24-178)||(8996098-8996245)
chr2 (73-202)||(8991882-8992013)
chr2 (73-203)||(8973044-8973176)
chr2 (45-159)||(8975440-8975554)
chr2 (21-170)||(9016238-9016386)
chr2 (63-168)||(9030166-9030272)
chr2 (211-273)||(8996024-8996087)
chr2 (245-277)||(8975361-8975393)
[»] chr5 (1 HSPs)
chr5 (211-265)||(3643110-3643164)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 33987960 - 33987702
Alignment:
Q  21 cctaacactttcttcctcctttgttttctttattcttaaaacattatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987960 cctaacactttcttcctcctttgttttctttattcttaaaacattatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaa 33987861  T
Q  121 ttaaattaatattcttgtcttaaagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaacgctattatatct 220  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  33987860 ttaaattaatattcttgtcttacagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatggactaaccgggtaaggctattatatct 33987761  T
Q  221 ttcatctttgtgttcattcatttgttttgagtgccacagttgt--gtgtctgttagaat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  33987760 ttcatctttgtgttcattcatttgttttgagtgccacagttgtgcgtgtctgttagaat 33987702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 9020746 - 9020506
Alignment:
Q  27 actttcttcctcctttgttttctttattcttaaaacattatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaattaaat 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||||||||    
T  9020746 acttttttcctcctttgttttctttattcttaaaacattatcatcaatcaaagtagatacatacacattggcca-catggtgaattgccaaaaattaaat 9020648  T
Q  127 taatattcttgtcttaaagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaacgctattatatctttcatc 226  Q
    | ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  9020647 tgatattctcgtcttaaagcaaaatatcatgatcggattcttatcttattccttgcttttgttgatgggctaaccggctaagggtattatatctttcatc 9020548  T
Q  227 tttgtgttcattcatttg-ttttgagtgccacagttgtgtgt 267  Q
    |||||||||||||||||| |||||||||||||  ||||||||    
T  9020547 tttgtgttcattcatttgtttttgagtgccactattgtgtgt 9020506  T

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Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 24 - 267
Target Start/End: Complemental strand, 8988341 - 8988097
Alignment:
Q  24 aacactttcttcctcctttgttttctttattcttaaaacattatcatcaatcagagtagata----catacacatagtccatcatgatgaattgccaaaa 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||    ||||||||||| ||||||||||||||||||||||    
T  8988341 aacactttcttcctcctttgttttccttattcttaaaacattatcatcaatcatagtacgtaagtacatacacataggccatcatgatgaattgccaaaa 8988242  T
Q  120 attaaattaatattcttgtcttaaagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaacgctattatatc 219  Q
    || ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8988241 ataaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatc 8988142  T
Q  220 tttcatctttgtgttcattcatttgttttgagtgccacagttgtgtgt 267  Q
    |||||||||||||||||||| |   ||||||| ||||| |||||||||    
T  8988141 tttcatctttgtgttcattcgt---ttttgagagccactgttgtgtgt 8988097  T

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Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 39 - 267
Target Start/End: Complemental strand, 9026667 - 9026436
Alignment:
Q  39 ctttgttttctttattcttaaaacattatcatcaatcagagtaga--tacatacacatagtccatcatgatgaattgccaaaaattaaattaatattctt 136  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |  |||| |||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  9026667 ctttgatttctttattcttaaaacattatcatcaatcagagtaaaaatacacacacataggccatcgtgatgaattgccaaaaattaaattgatattctt 9026568  T
Q  137 gtcttaaagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaacgctattatatctttcatctttgtgttca 236  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  9026567 gtcttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttgtgttca 9026468  T
Q  237 ttcatttg-ttttgagtgccacagttgtgtgt 267  Q
    |||||||| ||||||||||||| |||||||||    
T  9026467 ttcatttgtttttgagtgccactgttgtgtgt 9026436  T

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Target: chr2; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 39 - 263
Target Start/End: Complemental strand, 9031934 - 9031707
Alignment:
Q  39 ctttgttttctttattcttaaaacattatcatcaatcagagtaga--tacatacacatagtccatcatgatgaattgccaaaaattaaattaatattctt 136  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |  |||| |||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  9031934 ctttgatttctttattcttaaaacattatcatcaatcagagtaaaaatacacacacataggccatcgtgatgaattgccaaaaattaaattgatattctt 9031835  T
Q  137 gtcttaaagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaacgctattatatctttcatctttgtgttca 236  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  9031834 gtcttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttgtgttca 9031735  T
Q  237 ttcatttg-ttttgagtgccacagttgt 263  Q
    |||||||| ||||||||||||| |||||    
T  9031734 ttcatttgtttttgagtgccactgttgt 9031707  T

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Target: chr2; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 206
Target Start/End: Complemental strand, 9023294 - 9023133
Alignment:
Q  45 tttctttattcttaaaacattatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaattaaattaatattcttgtcttaaa 144  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  9023294 tttctttattcttaaaacattatgatcaatcatagtaaatacatacacctaggccatcacgatgaattgccaaaaattaaattgatattcttgacttaaa 9023195  T
Q  145 gcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggcta 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023194 gcaaagtatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggcta 9023133  T

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Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 8996245 - 8996098
Alignment:
Q  24 aacactttcttcctcctttgttttctttattcttaaaacattatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaatta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||    
T  8996245 aacactttcttcctcctttgttttctttattcttaaaacattatcatcaatcatagtagatacataaacataggccatcatggtgaattgccaaaaatta 8996146  T
Q  124 aattaatattcttgtcttaaagcaaaatatcatgatctgattcttatcttatccc 178  Q
    ||||||||||||       ||||||||||| |||||||||||| |||||||||||    
T  8996145 aattaatattct-------aagcaaaatattatgatctgattcgtatcttatccc 8996098  T

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Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 8992013 - 8991882
Alignment:
Q  73 atcagagtagatacatacacatagtccatcatgatgaattgc--caaaaattaaattaatattcttgtcttaaagcaaaatatcatgatctgattcttat 170  Q
    ||||||||| |||||||||||||| ||||||| ||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8992013 atcagagtaaatacatacacataggccatcattatgaattgaagcaaaaattaaattgatattcttgtcttaaagcaaaatatcatgatctgattcttat 8991914  T
Q  171 cttatcccttgcttttgttgatgggctaaccg 202  Q
    |||||||||||||||||||||| |||||||||    
T  8991913 cttatcccttgcttttgttgataggctaaccg 8991882  T

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Target: chr2; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 8973176 - 8973044
Alignment:
Q  73 atcagagtagatacatacacatagtccatcatgatgaattgc--caaaaattaaattaatattcttgtcttaaagcaaaatatcatgatctgattcttat 170  Q
    ||||||||| |||| ||||||||| ||| ||| ||||||||   ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  8973176 atcagagtaaatacttacacataggccaccattatgaattgaagcaaaaattaaattgatattcttgtcttgaagcaaaatatcatgatctgattcttat 8973077  T
Q  171 cttatcccttgcttttgttgatgggctaaccgg 203  Q
    |||||||||||||||||||||| ||||||||||    
T  8973076 cttatcccttgcttttgttgataggctaaccgg 8973044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 8975554 - 8975440
Alignment:
Q  45 tttctttattcttaaaacattatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaattaaattaatattcttgtcttaaa 144  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  8975554 tttcgttattcttaaaacattatcatcaatcagagtaaatacatacacataggccatcatgatgaattgccaacaattaaattgatattctagtcttaaa 8975455  T
Q  145 gcaaaatatcatgat 159  Q
      |||||||||||||    
T  8975454 caaaaatatcatgat 8975440  T

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Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 9016386 - 9016238
Alignment:
Q  21 cctaacactttcttcctcctttgttttctttattcttaaaacattatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaa 120  Q
    |||||||||||| | || |||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| | |||  || ||||||||  |||||    
T  9016386 cctaacactttcgttctactttgttt-ctttattcttaaaacattatcatcaattagagtaaatacatacacatgggccacgattatgaattgaaaaaaa 9016288  T
Q  121 ttaaattaatattcttgtcttaaagcaaaatatcatgatctgattcttat 170  Q
    ||||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  9016287 ttaaattgatattcttgtcttatagcaaaatatcatgatctgactcttat 9016238  T

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Target: chr2; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 9030272 - 9030166
Alignment:
Q  63 attatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaa-ttaaattaatattcttgtcttaaagcaaaatatcatgatct 161  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||| |||||||| |||||    
T  9030272 attatcatcaatcagagtaaatagacacacataggccatcatgatgaattgtcaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatct 9030173  T
Q  162 gattctt 168  Q
    |||||||    
T  9030172 gattctt 9030166  T

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Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 8996087 - 8996024
Alignment:
Q  211 tattatatctttcatctttgtgttcattcatttg-ttttgagtgccacagttgtgtgtctgtta 273  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  8996087 tattatatctttcatctttgtgttctttcatttgtttttgagtgccacagttgtgtgtctgtta 8996024  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 8975393 - 8975361
Alignment:
Q  245 ttttgagtgccacagttgtgtgtctgttagaat 277  Q
    ||||||| |||||||||||||||||||||||||    
T  8975393 ttttgagagccacagttgtgtgtctgttagaat 8975361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 3643164 - 3643110
Alignment:
Q  211 tattatatctttcatctttgtgttcattcatttgttttgagtgccacagttgtgt 265  Q
    ||||||||| |||||||||| |||||||||||  |||||||| |||| |||||||    
T  3643164 tattatatcattcatctttgggttcattcattccttttgagtcccactgttgtgt 3643110  T

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