View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8465_low_8 (Length: 250)
Name: NF8465_low_8
Description: NF8465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8465_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36290640 - 36290399
Alignment:
| Q |
1 |
tttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattgattgtcaagaagaacggtgttcc |
100 |
Q |
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| T |
36290640 |
tttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattgattgtcaagaagaacggtgttcc |
36290541 |
T |
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| Q |
101 |
tgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtat |
200 |
Q |
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| T |
36290540 |
tgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtat |
36290441 |
T |
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| Q |
201 |
ataactcctgaagaaagtattatcttgaatgtcctctctgct |
242 |
Q |
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| T |
36290440 |
ataactcctgaagaaagtattatctcgaatgtcctttctgct |
36290399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 36313121 - 36312882
Alignment:
| Q |
3 |
tctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattgattgtcaagaagaacggtgttcctg |
102 |
Q |
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| T |
36313121 |
tctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactccactgactttgattgtgaagaagaatggcgttcctg |
36313022 |
T |
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| Q |
103 |
atcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatat |
202 |
Q |
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| T |
36313021 |
accttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacatttatgatcagattaaggatattatcatggactatat |
36312922 |
T |
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| Q |
203 |
aactcctgaagaaagtattatcttgaatgtcctctctgct |
242 |
Q |
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| T |
36312921 |
aactcctgaagagagcattatcctgaatgttctttctgct |
36312882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 33579949 - 33579866
Alignment:
| Q |
143 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctt |
226 |
Q |
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| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttatacctatggaagaaagcattatctt |
33579866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
143 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
204 |
Q |
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| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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