View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8466_high_10 (Length: 341)
Name: NF8466_high_10
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 2350913 - 2351224
Alignment:
| Q |
11 |
tagataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2350913 |
tagatactacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatggg |
2351012 |
T |
|
| Q |
111 |
tcatgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatcca |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2351013 |
tcgtgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatcca |
2351112 |
T |
|
| Q |
211 |
ccggggcataatgtgttaccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagaga |
310 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2351113 |
ccggggcataatgtgttgccacacgcggtgacagaggatgtgctttttaacggttatttggtgcctaaaaatgggacggtcaattttatggtggcagaga |
2351212 |
T |
|
| Q |
311 |
tggggtgggatc |
322 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2351213 |
tggggtgggatc |
2351224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 2303339 - 2303648
Alignment:
| Q |
13 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
112 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
2303339 |
gatactacttccactactttgcaatggattatggcgaatttggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtg |
2303438 |
T |
|
| Q |
113 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
212 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2303439 |
gtgatgagaatggagagaaggaggaagtgaaagaggaagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccacc |
2303538 |
T |
|
| Q |
213 |
ggggcataatgtgttaccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatg |
312 |
Q |
| |
|
||||||| | |||| ||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| |||| |||||| |
|
|
| T |
2303539 |
ggggcattttctgttgccacacgcggtgaaagaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcggagatg |
2303638 |
T |
|
| Q |
313 |
gggtgggatc |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
2303639 |
gggtgggatc |
2303648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 322
Target Start/End: Original strand, 2326893 - 2327203
Alignment:
| Q |
12 |
agataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggt |
111 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | |||||| |
|
|
| T |
2326893 |
agatactacttccaccgctttgcattggattatggcgaatttggtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggt |
2326992 |
T |
|
| Q |
112 |
catgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccac |
211 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||| ||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2326993 |
ggtgatggtgttgtagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccac |
2327092 |
T |
|
| Q |
212 |
cggggcataatgtgttaccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagat |
311 |
Q |
| |
|
| |||||| |||||| || || || |||| || |||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2327093 |
cagggcattttgtgttgcctcatgcagtgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagat |
2327192 |
T |
|
| Q |
312 |
ggggtgggatc |
322 |
Q |
| |
|
||||| ||||| |
|
|
| T |
2327193 |
ggggttggatc |
2327203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 2330609 - 2330912
Alignment:
| Q |
13 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
112 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| || |||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
2330609 |
gatactacttccaccgctttgcaatggattatggcgaatttggtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtg |
2330708 |
T |
|
| Q |
113 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
212 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| ||||| |||||| |||| |||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
2330709 |
gcgatgatgctggagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccacc |
2330808 |
T |
|
| Q |
213 |
ggggcataatgtgttaccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatg |
312 |
Q |
| |
|
|||||| ||||| || ||||| |||| ||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
2330809 |
agggcatttcgtgttgcctcacgcagtgagcgaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcagagatg |
2330908 |
T |
|
| Q |
313 |
gggt |
316 |
Q |
| |
|
|||| |
|
|
| T |
2330909 |
gggt |
2330912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 2321040 - 2321350
Alignment:
| Q |
13 |
gataatacttccacggctttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtc |
112 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||| | |||||||||| | |
|
|
| T |
2321040 |
gatactacttccactgctttgcagtggattatggcgaatttggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggtta |
2321139 |
T |
|
| Q |
113 |
atgatggaaatggagagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc |
212 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| | |||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
2321140 |
gtgatgacaatggagagaaggaggaagtgaaagaggaaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccacc |
2321239 |
T |
|
| Q |
213 |
-ggggcataatgtgttaccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagat |
311 |
Q |
| |
|
||||||| |||||| ||||| |||||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| || | ||||| |
|
|
| T |
2321240 |
aggggcattttgtgttggcacacacggtgaaagaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctgtcggagat |
2321339 |
T |
|
| Q |
312 |
ggggtgggatc |
322 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2321340 |
ggcgtgggatc |
2321350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 2293743 - 2294035
Alignment:
| Q |
30 |
tttgcaatggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagag |
129 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||||| || ||||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
2293743 |
tttgcagtggattatggcgaatgtagtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagag |
2293842 |
T |
|
| Q |
130 |
aaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttac |
229 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| | | ||| | |
|
|
| T |
2293843 |
aaggaggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgc |
2293942 |
T |
|
| Q |
230 |
cacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatc |
322 |
Q |
| |
|
|||||||||||| |||||||||| |||| | |||||||||||||||||||| |||||||| ||||| || |||| ||||||| || ||||| |
|
|
| T |
2293943 |
cacacgcggtgaaagaggatgtggttttggacggttatttggtgcctaaaaacgggacggtgaatttcttgctggcggagatggcgttggatc |
2294035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 2310081 - 2310340
Alignment:
| Q |
37 |
tggattatggcaaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtgg |
136 |
Q |
| |
|
||||||||||| ||| ||||||||||||| || ||| | |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
2310081 |
tggattatggcgaatgtggtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggagg |
2310180 |
T |
|
| Q |
137 |
aagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgc |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||| | | ||| |||||||| |
|
|
| T |
2310181 |
aagtgaaagaggaagacttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgc |
2310280 |
T |
|
| Q |
237 |
ggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattt |
296 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2310281 |
ggtgaaagaggatgtggttttggacggttatttggtgcctaaaaacgggacggtgaattt |
2310340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 26506746 - 26506839
Alignment:
| Q |
229 |
ccacacgcggtgacagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatc |
322 |
Q |
| |
|
||||| || ||||| ||||||||| ||||||| ||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||||| |
|
|
| T |
26506746 |
ccacatgcagtgaccgaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcagaggttgggtgggatc |
26506839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 26494726 - 26494780
Alignment:
| Q |
254 |
tttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcaga |
308 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
26494726 |
ttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga |
26494780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 41127050 - 41127216
Alignment:
| Q |
142 |
aaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtga |
241 |
Q |
| |
|
||||||||||| |||||||| || ||||| || |||||| ||||||||||| ||||| |||| ||||||||||| |||||| || || ||||||| |
|
|
| T |
41127050 |
aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgccccatgcggtga |
41127149 |
T |
|
| Q |
242 |
cagaggatgtgctttttaatggttatttggtgcctaaaaatgggacggtcaattttatggtggcaga |
308 |
Q |
| |
|
||||||||| |||| | ||||| ||| |||||||||||| | || ||||| ||||||||||| |
|
|
| T |
41127150 |
aggaggatgtggttttcgacggttacttgctgcctaaaaatgtggtagtgaatttcatggtggcaga |
41127216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University