View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8466_high_12 (Length: 329)

Name: NF8466_high_12
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8466_high_12
NF8466_high_12
[»] chr5 (4 HSPs)
chr5 (87-304)||(16291930-16292138)
chr5 (175-245)||(36759185-36759255)
chr5 (186-231)||(34458026-34458071)
chr5 (64-95)||(16292320-16292351)
[»] chr3 (8 HSPs)
chr3 (154-241)||(44846956-44847043)
chr3 (154-231)||(42993469-42993546)
chr3 (154-267)||(44006395-44006508)
chr3 (177-229)||(37248891-37248943)
chr3 (152-231)||(44810663-44810742)
chr3 (177-209)||(37717045-37717077)
chr3 (192-231)||(38108810-38108849)
chr3 (270-304)||(47047241-47047275)
[»] chr2 (7 HSPs)
chr2 (153-268)||(4425877-4425992)
chr2 (154-231)||(20897432-20897509)
chr2 (192-230)||(44070785-44070823)
chr2 (192-233)||(34456973-34457014)
chr2 (154-231)||(41474724-41474800)
chr2 (175-231)||(40614744-40614800)
chr2 (154-214)||(41474601-41474661)
[»] chr7 (10 HSPs)
chr7 (149-267)||(27543683-27543801)
chr7 (154-241)||(47317777-47317864)
chr7 (175-231)||(18792633-18792689)
chr7 (192-270)||(27866850-27866928)
chr7 (154-267)||(18791929-18792042)
chr7 (152-229)||(31594311-31594388)
chr7 (177-229)||(20708230-20708282)
chr7 (177-229)||(20876274-20876326)
chr7 (177-229)||(47944392-47944444)
chr7 (177-229)||(47949822-47949874)
[»] chr4 (11 HSPs)
chr4 (153-267)||(43036438-43036552)
chr4 (154-261)||(40729880-40729987)
chr4 (190-231)||(47110057-47110098)
chr4 (153-229)||(2333829-2333905)
chr4 (162-231)||(32430492-32430561)
chr4 (192-241)||(50825966-50826015)
chr4 (153-237)||(43035766-43035850)
chr4 (192-230)||(22436075-22436113)
chr4 (152-246)||(47110734-47110828)
chr4 (154-204)||(52658007-52658057)
chr4 (155-211)||(17045012-17045068)
[»] chr8 (11 HSPs)
chr8 (154-231)||(6253587-6253664)
chr8 (177-229)||(33073700-33073752)
chr8 (152-231)||(6253300-6253379)
chr8 (192-231)||(20086230-20086269)
chr8 (154-231)||(233929-234006)
chr8 (154-231)||(710340-710417)
chr8 (154-231)||(747552-747629)
chr8 (154-231)||(871447-871524)
chr8 (192-230)||(8037288-8037326)
chr8 (192-241)||(32472429-32472478)
chr8 (152-204)||(24803744-24803796)
[»] scaffold0146 (2 HSPs)
scaffold0146 (174-241)||(29977-30044)
scaffold0146 (174-241)||(32319-32386)
[»] chr1 (8 HSPs)
chr1 (175-266)||(37770215-37770306)
chr1 (154-231)||(33216334-33216411)
chr1 (152-245)||(18982055-18982148)
chr1 (192-231)||(18981521-18981560)
chr1 (154-261)||(21761277-21761384)
chr1 (153-231)||(21762046-21762124)
chr1 (154-207)||(33216985-33217038)
chr1 (154-231)||(42805868-42805945)
[»] chr6 (2 HSPs)
chr6 (154-231)||(33820097-33820174)
chr6 (192-228)||(6979019-6979055)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 87 - 304
Target Start/End: Complemental strand, 16292138 - 16291930
Alignment:
Q  87 ttcttgaatacccattatgagtaatgtttgactgagtgagagacttttttgaatatgaaaaatgctagaaaattgtttttctaatattaaaaacttcaca 186  Q
    ||||||||||||||||||||||||||||||||| ||    |||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  16292138 ttcttgaatacccattatgagtaatgtttgacttag----agactttttttaatatgaaaaatgctaaaaaattgtttttctaatattaaaaatttcaca 16292043  T
Q  187 ataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccagtaaactacccctgaattcatcctcctcacaactt 286  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||||| || |||||||    || ||||||| ||||||||||||||||||||||||    
T  16292042 ataacacaagtaaaatacttaaatgcctccagcagtagttaactatcatttagaatccgac----gt-aactaccgctgaattcatcctcctcacaactt 16291948  T
Q  287 tctcattttttcattcca 304  Q
    ||||||||||||||||||    
T  16291947 tctcattttttcattcca 16291930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 36759255 - 36759185
Alignment:
Q  175 aaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccg 245  Q
    |||||||||||| | | ||||||||||||| | |||| | ||||||||||||||||| | |||||||||||    
T  36759255 aaaaacttcacattgacacaagtaaaatacctgaatgcccccagcggtagttaactaccgttgaggatccg 36759185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 34458026 - 34458071
Alignment:
Q  186 aataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||    
T  34458026 aataacacaagtaaaatacttaaatggctctagcggtagttaacta 34458071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 95
Target Start/End: Complemental strand, 16292351 - 16292320
Alignment:
Q  64 gatatacatttatgatgattcatttcttgaat 95  Q
    ||||||||||||||||||||||||||||||||    
T  16292351 gatatacatttatgatgattcatttcttgaat 16292320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 44846956 - 44847043
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgagga 241  Q
    |||||||| |||||| | ||| ||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||| | |||||||    
T  44846956 gaaaattgcttttctgacattgaaaacttcacattaacacaagtaaaatacttaaatacctccagcggtagttaactaccgttgagga 44847043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 42993546 - 42993469
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    ||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||  || |||| ||| |||||||    
T  42993546 gaaaattgtttttctgatattgaaaacttcacaatgacacaagtaaaatacttaaataccttcagcagtatttaacta 42993469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 44006395 - 44006508
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccagt 253  Q
    |||||||| |||||| | ||| |||| |||||||| | | |||||||||||||||||| | ||||||||||||||||| | || |||| ||| || ||||    
T  44006395 gaaaattgcttttctgacattgaaaatttcacaatgacataagtaaaatacttaaatgcccccagcggtagttaactaccgttcaggaaccggcagcagt 44006494  T
Q  254 aaactacccctgaa 267  Q
     ||||||| |||||    
T  44006495 taactaccgctgaa 44006508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 37248891 - 37248943
Alignment:
Q  177 aaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||| ||||||    
T  37248891 aaacttcactataatacaggtaaaatacttaaatgtctctagcggttgttaac 37248943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 44810742 - 44810663
Alignment:
Q  152 tagaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||| |||||| |  || ||||||| ||||| | | |||||||||||||||||  |||||||||||||||||||    
T  44810742 tagaaaattgcttttctgacgttgaaaactttacaatgacaaaagtaaaatacttaaatacctccagcggtagttaacta 44810663  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 37717045 - 37717077
Alignment:
Q  177 aaacttcacaataatacaagtaaaatacttaaa 209  Q
    |||||||||||||||||||||||||||||||||    
T  37717045 aaacttcacaataatacaagtaaaatacttaaa 37717077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 38108810 - 38108849
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  38108810 acaagtaaaatacttaaatacctccagcggtagttaacta 38108849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 47047241 - 47047275
Alignment:
Q  270 catcctcctcacaactttctcattttttcattcca 304  Q
    ||||||||||| |||||||||||||||||||||||    
T  47047241 catcctcctcataactttctcattttttcattcca 47047275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 268
Target Start/End: Original strand, 4425877 - 4425992
Alignment:
Q  153 agaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccag 252  Q
    ||||| ||| |||||| | ||| ||||||||||||||| |||||||||||||||||||| | ||| | ||| ||||||| | ||||||| |||||| |||    
T  4425877 agaaagttgcttttctgacattgaaaacttcacaataacacaagtaaaatacttaaatgcccccaacagtacttaactaccgttgaggacccgacaacag 4425976  T
Q  253 taaactacccctgaat 268  Q
    | ||||||| ||||||    
T  4425977 ttaactaccgctgaat 4425992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 20897509 - 20897432
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    ||||||||||||||||| || |||||||||| || || ||| ||||||||||||||||||| |||||||||| |||||    
T  20897509 gaaaattgtttttctaacatcaaaaacttcataaaaacacatgtaaaatacttaaatgtcttcagcggtagtaaacta 20897432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 44070785 - 44070823
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaact 230  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  44070785 acaagtaaaatacgtaaatgcctccagcggtagttaact 44070823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 34456973 - 34457014
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaactatc 233  Q
    |||||||||||||||||||| |  ||||||||||||||||||    
T  34456973 acaagtaaaatacttaaatgccctcagcggtagttaactatc 34457014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 41474800 - 41474724
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    ||||||||||| ||| ||||| | || |||||||| | |||||||||||||||||||  || |||| |||||||||||    
T  41474800 gaaaattgtttctctcatattgataatttcacaatgacacaagtaaaatacttaaat-acttcagcagtagttaacta 41474724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 40614800 - 40614744
Alignment:
Q  175 aaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||| ||  | |||||||||||||||||||| | ||||| |||||||||||    
T  40614800 aaaaacttcataaagacacaagtaaaatacttaaatgcccccagcagtagttaacta 40614744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 41474601 - 41474661
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtct 214  Q
    ||||||||||||| | | ||| |||| |||||||||| |||| ||||||| ||||||||||    
T  41474601 gaaaattgtttttttgacattgaaaatttcacaataacacaaataaaatatttaaatgtct 41474661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 27543801 - 27543683
Alignment:
Q  149 tgctagaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgaca 248  Q
    ||||| ||||||| |||||| | ||||||||||| ||| ||| |||||||||||| | |||| ||||| ||||||||||||||   ||||||||||| ||    
T  27543801 tgctaaaaaattgcttttctgacattaaaaactttacattaacacaagtaaaatattgaaatatctcccgcggtagttaactactgttgaggatccggca 27543702  T
Q  249 ccagtaaactacccctgaa 267  Q
     |||| ||||||| |||||    
T  27543701 gcagttaactaccgctgaa 27543683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 47317864 - 47317777
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgagga 241  Q
    |||||||| |||||| | ||| ||||||| ||||| | |||||||||||||||||||| | ||||||||||||||||| | |||||||    
T  47317864 gaaaattgcttttctgacattgaaaactttacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgagga 47317777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 18792689 - 18792633
Alignment:
Q  175 aaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||| ||  | |||||||||||||||||||||||||||| ||| |||||||    
T  18792689 aaaaacttcataaagacacaagtaaaatacttaaatgtctccagcagtaattaacta 18792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 27866850 - 27866928
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccagtaaactacccctgaattc 270  Q
    |||||||||||| ||||||| |  |||||||||||||||| | |||| || ||| || |||| ||||||| ||||||||    
T  27866850 acaagtaaaatatttaaatgccctcagcggtagttaactaccgttgaagacccggcagcagttaactaccgctgaattc 27866928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 18791929 - 18792042
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccagt 253  Q
    ||||||||||||| | | ||| || |||||  || || |||||||||||||||||||  |  || | ||||||||||| |||||| || |||||| ||||    
T  18791929 gaaaattgtttttttgacattgaatacttcctaaaaacacaagtaaaatacttaaataccatcaacagtagttaactaccattgaagacccgacagcagt 18792028  T
Q  254 aaactacccctgaa 267  Q
     ||||||| |||||    
T  18792029 taactaccgctgaa 18792042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 31594388 - 31594311
Alignment:
Q  152 tagaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    ||||||||||||||||| ||||| |||| |||  | | | ||||||||||||| |||||||| ||| |||| ||||||    
T  31594388 tagaaaattgtttttctgatattgaaaagttccaattgacacaagtaaaatacataaatgtccccaacggttgttaac 31594311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 20708230 - 20708282
Alignment:
Q  177 aaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    |||||||||||| | |||||||||||||| ||||| | |||||||| ||||||    
T  20708230 aaacttcacaatgacacaagtaaaatactaaaatgcccccagcggttgttaac 20708282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 20876274 - 20876326
Alignment:
Q  177 aaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    |||||||||||| | |||||||||||||| ||||| | |||||||| ||||||    
T  20876274 aaacttcacaatgacacaagtaaaatactaaaatgcccccagcggttgttaac 20876326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 47944444 - 47944392
Alignment:
Q  177 aaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    |||||||||||| | ||||||||||||||||||| || ||| |||| ||||||    
T  47944444 aaacttcacaatgacacaagtaaaatacttaaatatccccaacggttgttaac 47944392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 47949874 - 47949822
Alignment:
Q  177 aaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    |||||||||||| | ||||||||||||||||||| || ||| |||| ||||||    
T  47949874 aaacttcacaatgacacaagtaaaatacttaaatatccccaacggttgttaac 47949822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 43036552 - 43036438
Alignment:
Q  153 agaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccag 252  Q
    ||||||||| |||| | | || |||||||||||||| | |||||||||||||||||||| | | ||||||||||||||| | ||||||| ||| || |||    
T  43036552 agaaaattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccggcagcag 43036453  T
Q  253 taaactacccctgaa 267  Q
    | ||||||| |||||    
T  43036452 ttaactaccgctgaa 43036438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 40729987 - 40729880
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccagt 253  Q
    |||||||| |||||| | ||| ||||||||||||| | |||||||||||||||||||| | ||||||||| ||||||| | || |||| ||| || ||||    
T  40729987 gaaaattgcttttctgacattgaaaacttcacaatgacacaagtaaaatacttaaatgccaccagcggtatttaactaccgttcaggaaccggcagcagt 40729888  T
Q  254 aaactacc 261  Q
     |||||||    
T  40729887 taactacc 40729880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 47110057 - 47110098
Alignment:
Q  190 atacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  47110057 atacaagtaaaatacttaaatgtctctagcggtagttaacta 47110098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 2333905 - 2333829
Alignment:
Q  153 agaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    ||||||||| |||||| | || |||||||||||||| | |||||||||||||||||||| | ||| |||| ||||||    
T  2333905 agaaaattgcttttctgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccccaacggttgttaac 2333829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 32430492 - 32430561
Alignment:
Q  162 tttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    ||||| ||| ||||||||||||  || || ||| || ||||||||||||||| |||||||||||||||||    
T  32430492 tttttttaacattaaaaacttcctaaaaacacatgtgaaatacttaaatgtccccagcggtagttaacta 32430561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 50826015 - 50825966
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaactatcattgagga 241  Q
    |||||||||||||||||||||||| | |||||||||||||  ||||||||    
T  50826015 acaagtaaaatacttaaatgtctctaccggtagttaactactattgagga 50825966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 43035766 - 43035850
Alignment:
Q  153 agaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattg 237  Q
    ||||||||| |||||| | ||| | || |||||| | | ||||||||||||| |||||||| || |||||||||||||| |||||    
T  43035766 agaaaattgcttttctgacattgataagttcacattgacacaagtaaaatacctaaatgtccccggcggtagttaactaccattg 43035850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 22436075 - 22436113
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaact 230  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  22436075 acaagtaaaatacttaaatgcctccagcggcagttaact 22436113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 47110828 - 47110734
Alignment:
Q  152 tagaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccga 246  Q
    |||||||||| ||||||||| || |||| || ||| | | |||||||||||||| ||||  | | ||||||||||||||| | ||||| ||||||    
T  47110828 tagaaaattgcttttctaatcttgaaaattttacattgacacaagtaaaatactgaaatacccctagcggtagttaactaccgttgagaatccga 47110734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 52658007 - 52658057
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatac 204  Q
    |||||||||| |||||| ||| | ||||||||||||| |||||||||||||    
T  52658007 gaaaattgttcttctaacattcataacttcacaataacacaagtaaaatac 52658057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 17045012 - 17045068
Alignment:
Q  155 aaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatg 211  Q
    |||||||||||||  | ||  ||||||||||||| | ||||||||||||||||||||    
T  17045012 aaaattgtttttcacacatagaaaacttcacaatgacacaagtaaaatacttaaatg 17045068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 6253664 - 6253587
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||| |||||||| ||  ||||||||||||| | |||||||||||||||||||||| || ||||||||||||||    
T  6253664 gaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaatacttaaatgtcccccgcggtagttaacta 6253587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 33073700 - 33073752
Alignment:
Q  177 aaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaac 229  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  33073700 aaacttcacaataacacaagtaaaatacttaaatgcctccagcggttgttaac 33073752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 6253300 - 6253379
Alignment:
Q  152 tagaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||| |||||||| ||  ||||||||||||| | |||||||||||| ||||||| | ||| |||||||||||||    
T  6253300 tagaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaataattaaatgcccccaacggtagttaacta 6253379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 20086269 - 20086230
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  20086269 acaaataaaatacttaaatgcctccagcggtagttaacta 20086230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 233929 - 234006
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatg-tctccagcggtagttaacta 231  Q
    |||||||| |||| | |||| |||||||||| ||| | |||||||||||||||||||| |||  |||||||||||||||    
T  233929 gaaaattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctct-tagcggtagttaacta 234006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 710340 - 710417
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatg-tctccagcggtagttaacta 231  Q
    |||||||| |||| | |||| |||||||||| ||| | |||||||||||||||||||| |||  |||||||||||||||    
T  710340 gaaaattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctct-tagcggtagttaacta 710417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 747552 - 747629
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatg-tctccagcggtagttaacta 231  Q
    |||||||| |||| | |||| |||||||||| ||| | |||||||||||||||||||| |||  |||||||||||||||    
T  747552 gaaaattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctct-tagcggtagttaacta 747629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 871447 - 871524
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatg-tctccagcggtagttaacta 231  Q
    |||||||| |||| | |||| |||||||||| ||| | |||||||||||||||||||| |||  |||||||||||||||    
T  871447 gaaaattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctct-tagcggtagttaacta 871524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 8037326 - 8037288
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaact 230  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  8037326 acaagtaaaatacataaatgtccccagcggtagttaact 8037288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 32472429 - 32472478
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaactatcattgagga 241  Q
    |||||||||||||| ||||| |||| |||||||||||||| | |||||||    
T  32472429 acaagtaaaatactaaaatgcctcccgcggtagttaactaccgttgagga 32472478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 24803796 - 24803744
Alignment:
Q  152 tagaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatac 204  Q
    |||||||||| |||||| | ||| | ||||||||||||| |||||||||||||    
T  24803796 tagaaaattgcttttctcacattcataacttcacaataacacaagtaaaatac 24803744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 30044 - 29977
Alignment:
Q  174 taaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgagga 241  Q
    ||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||| | |||||||    
T  30044 taaaaacttcacaatgatacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgagga 29977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 32386 - 32319
Alignment:
Q  174 taaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgagga 241  Q
    ||||||||||||||| | |||||||||||||||||||| | ||||||||||||||||| | |||||||    
T  32386 taaaaacttcacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgagga 32319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 37770215 - 37770306
Alignment:
Q  175 aaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccagtaaactacccctga 266  Q
    ||||||||| |||| | ||| |||||||||||||||| | ||| ||||||||||||||| |||||||||||| | |||| ||||||| ||||    
T  37770215 aaaaacttcgcaatgacacacgtaaaatacttaaatgcccccaacggtagttaactatcgttgaggatccgatatcagttaactaccgctga 37770306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 33216334 - 33216411
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatg-tctccagcggtagttaacta 231  Q
    ||||||||||||| | | ||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||    
T  33216334 gaaaattgtttttttgacattgaaaacttcacaatgacacaagtaaaatacttaaatgctct-cagcggtagttaacta 33216411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 18982148 - 18982055
Alignment:
Q  152 tagaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccg 245  Q
    |||||||||| |||||| | |||||| | ||||||   |||||||||||||| | |||| ||||| || ||||||||||| | |||||||||||    
T  18982148 tagaaaattgcttttctgacattaaataattcacaccgatacaagtaaaatattgaaatatctcccgcagtagttaactaccgttgaggatccg 18982055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 18981521 - 18981560
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  18981521 acaagtaaaatacttaaatgtccccagcgatagttaacta 18981560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 21761277 - 21761384
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaactatcattgaggatccgacaccagt 253  Q
    |||||||| |||| | | || |||||||||||| | | | ||||||||||  |||||| | | ||||||||||||||| | ||||||| |||||| ||||    
T  21761277 gaaaattgcttttttgacataaaaaacttcacattgacaaaagtaaaatatctaaatgcccctagcggtagttaactaccgttgaggacccgacatcagt 21761376  T
Q  254 aaactacc 261  Q
     |||||||    
T  21761377 taactacc 21761384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 21762124 - 21762046
Alignment:
Q  153 agaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    |||||||||||||||| | ||| | || |||||| | | | ||||||||||| |||||||| | |||||||||||||||    
T  21762124 agaaaattgtttttctgacattcataagttcacattgacataagtaaaatacctaaatgtccctagcggtagttaacta 21762046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 33217038 - 33216985
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatactta 207  Q
    |||||||| |||||| | ||| ||||||||||||| |||||| |||||||||||    
T  33217038 gaaaattgcttttctgacattgaaaacttcacaatgatacaaataaaatactta 33216985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 42805945 - 42805868
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    ||||||||||||||||| || |||||||||  || || | | |||||||||||||||  |||| | ||||||||||||    
T  42805945 gaaaattgtttttctaacatcaaaaacttcttaaaaacatatgtaaaatacttaaatacctccggtggtagttaacta 42805868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 33820097 - 33820174
Alignment:
Q  154 gaaaattgtttttctaatattaaaaacttcacaataatacaagtaaaatacttaaatgtctccagcggtagttaacta 231  Q
    ||||||||||||||||| || |||||||||  || |  ||| ||||||||||||||| |   ||||||||||||||||    
T  33820097 gaaaattgtttttctaacatcaaaaacttcctaaaagcacatgtaaaatacttaaatttactcagcggtagttaacta 33820174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 6979055 - 6979019
Alignment:
Q  192 acaagtaaaatacttaaatgtctccagcggtagttaa 228  Q
    |||||||||||||| |||| |||||||||||||||||    
T  6979055 acaagtaaaatactaaaatatctccagcggtagttaa 6979019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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