View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8466_high_14 (Length: 277)
Name: NF8466_high_14
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 52513238 - 52513106
Alignment:
| Q |
1 |
tcttgggattttcaaccaacacctttagcttgatcctcttcatttttccttttaattaacaacttaattagtatatgcaattataaatttttatcattat |
100 |
Q |
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| T |
52513238 |
tcttgggattttcaaccaacacctttagcttgatcctcttcatttttccttttaattaacaacttaattagtatatgcaattataaa-ttttatcattat |
52513140 |
T |
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| Q |
101 |
ggaatctacaaatctccatcatctccaagaccaa |
134 |
Q |
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| T |
52513139 |
ggaatctacaaatctccatcatctccaagaccaa |
52513106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 52513087 - 52512969
Alignment:
| Q |
159 |
gtttcttctttatccagtaccacatcctatagagttgttggaggaaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagtttt |
258 |
Q |
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||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52513087 |
gtttcttctttatccagtaccccatcctatacagttggaggaaccaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagtttt |
52512988 |
T |
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| Q |
259 |
aattatttcctatatatat |
277 |
Q |
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||||||||||||||||||| |
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| T |
52512987 |
aattatttcctatatatat |
52512969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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