View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8466_high_16 (Length: 247)
Name: NF8466_high_16
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_high_16 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 25959675 - 25959909
Alignment:
| Q |
13 |
gcacacacgtcagtaatatacaaaatatgatatggtcnnnnnnncaattgacaaatatgataaattctagattaccacccttnnnnnnntgataaattca |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25959675 |
gcacacacgccagtaatatacaaaatatgatatggtcaaaaaaacaattgacaaatatgataaattctagattaccacccttaaaaaaatgataaattca |
25959774 |
T |
|
| Q |
113 |
agattaccaatttctgctccaggtagttactcctttcagcgtgagnnnnnnngaaatccatcagttctttgatctctcgcaccaactatagaatatagat |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25959775 |
agattaccagtttctgctccaggtagttactcctttcagcgtgagtttttttgaaatccatcagttctttgatctctcgcaccaactatagaatatagat |
25959874 |
T |
|
| Q |
213 |
acattacaagttagttatttgtaaaaaagttaata |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25959875 |
acattacaagttagttatttgtaaaaaagttaata |
25959909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University