View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8466_high_19 (Length: 242)
Name: NF8466_high_19
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10372745 - 10372523
Alignment:
| Q |
1 |
taattgtgataacaatcaaatccaaagatatctcaaaatattttcatattagcaactaattaatctttaaagacgaattctcagtggttgagtttttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10372745 |
taattgtgataacaatcaaatccaaagatatctcaaaatattttcatattagcaactaattaatctttaaagacgaattctcagtggttgagtttttatt |
10372646 |
T |
|
| Q |
101 |
tggcgatttctcataattcaatattttgtatactttttgcacagaatcaaatcttatgcacatttgttaaataaagctgtaactgctacattaatctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10372645 |
tggcgatttctcataattcaatattttgtatactttttgcacagaatcaaatcttatgcacatttgttaaataaagctgtaactgctacattaatctcat |
10372546 |
T |
|
| Q |
201 |
tatgttttttaaactgtagtcca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
10372545 |
tatgttttttaaactgtagtcca |
10372523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10360635 - 10360570
Alignment:
| Q |
1 |
taattgtgataacaatcaaatccaaagatatctcaaaatattttcatattagcaactaattaatct |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10360635 |
taattgcgataacaatcaaatccaaagatatctcaaaatattttcatattagcaactaattaatct |
10360570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10430875 - 10430810
Alignment:
| Q |
1 |
taattgtgataacaatcaaatccaaagatatctcaaaatattttcatattagcaactaattaatct |
66 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10430875 |
taattgtgataacaatcaaatacaaagatatctcaaaatattttcatattagcaactaattaatct |
10430810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 10264203 - 10264259
Alignment:
| Q |
136 |
tttgcacagaatcaaatcttatgcacatttgttaaataaagctgtaactgctacatt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
10264203 |
tttgcacagaatcaaatcttatgcacatttgatgaataaagctgtaactgctacatt |
10264259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 10092298 - 10092345
Alignment:
| Q |
19 |
aatccaaagatatctcaaaatattttcatattagcaactaattaatct |
66 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10092298 |
aatccaaagatatctcaaaatattttcatattggcaactaattaatct |
10092345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 10199180 - 10199227
Alignment:
| Q |
19 |
aatccaaagatatctcaaaatattttcatattagcaactaattaatct |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
10199180 |
aatccaaagatatctcaaaatattttcatattggcaactaattaatct |
10199227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 10430542 - 10430504
Alignment:
| Q |
161 |
catttgttaaataaagctgtaactgctacattaatctca |
199 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
10430542 |
catttgttgaatgaagctgtaactgctacattaatctca |
10430504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 34958227 - 34958167
Alignment:
| Q |
136 |
tttgcacagaatcaaatcttatgcacatttgttaaataaagctgtaactgctacattaatct |
197 |
Q |
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|
||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||| |||| |
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| T |
34958227 |
tttgcacagaatcaaatattatgcacatttgttgaataaagttgt-actgctacatttatct |
34958167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 26910391 - 26910446
Alignment:
| Q |
136 |
tttgcacagaatcaaatcttatgcacatttgttaaataaagctgtaactgctacatt |
192 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| | ||| ||||||||||| |
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| T |
26910391 |
tttgcacagaatcaaatctcatgcacatttgttgaataatgttgt-actgctacatt |
26910446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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