View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8466_high_20 (Length: 238)
Name: NF8466_high_20
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 54572222 - 54572079
Alignment:
| Q |
79 |
taaccattatgggattgattttgggcaggagcagcaacagagtaaagaaaggaagggccaacaaggctattccgagcatccaccaaaaagcgttgaacct |
178 |
Q |
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| T |
54572222 |
taaccattatgggattgattttgagcaggagcagcaacagagtggagaaaggaagggccaacaaggttattccgagcatccaccaaaaagcgttgaacct |
54572123 |
T |
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| Q |
179 |
ctttaatggctttctttctggtattagacaatgaagcaagtctg |
222 |
Q |
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| T |
54572122 |
ctttaatggctttctttctggtattagacaatgaagcaagtctg |
54572079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 55155489 - 55155346
Alignment:
| Q |
79 |
taaccattatgggattgattttgggcaggagcagcaacagagtaaagaaaggaagggccaacaaggctattccgagcatccaccaaaaagcgttgaacct |
178 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55155489 |
taaccattatgggattgattttgagcaggagcagcaacagagtggagaaaggaagggccaacaaggttattccgagcatccaccaaaaagcgttgaacct |
55155390 |
T |
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| Q |
179 |
ctttaatggctttctttctggtattagacaatgaagcaagtctg |
222 |
Q |
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| T |
55155389 |
ctttaatggctttctttctggtattagacaatgaagcaagtctg |
55155346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4097167 - 4097125
Alignment:
| Q |
1 |
gacaagtaagcaactagtgtatgagatataaagcggtaataaa |
43 |
Q |
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| T |
4097167 |
gacaagtaagtaactagtgtatcagatataaagtggtaataaa |
4097125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 54572276 - 54572246
Alignment:
| Q |
19 |
gtatgagatataaagcggtaataaataacaa |
49 |
Q |
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| T |
54572276 |
gtatgagatataaagcggtaataaataacaa |
54572246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 55155543 - 55155513
Alignment:
| Q |
19 |
gtatgagatataaagcggtaataaataacaa |
49 |
Q |
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| T |
55155543 |
gtatgagatataaagcggtaataaataacaa |
55155513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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