View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8466_high_7 (Length: 419)

Name: NF8466_high_7
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8466_high_7
NF8466_high_7
[»] chr2 (2 HSPs)
chr2 (1-401)||(17441143-17441543)
chr2 (23-117)||(17446954-17447048)
[»] chr6 (19 HSPs)
chr6 (12-287)||(33387537-33387806)
chr6 (6-276)||(33303855-33304119)
chr6 (67-243)||(33644952-33645128)
chr6 (11-140)||(28870678-28870806)
chr6 (10-147)||(33261980-33262117)
chr6 (23-149)||(33407756-33407882)
chr6 (1-140)||(33409338-33409477)
chr6 (25-243)||(33284987-33285205)
chr6 (23-149)||(33396806-33396932)
chr6 (18-243)||(9166135-9166357)
chr6 (11-149)||(33281096-33281234)
chr6 (26-150)||(33271219-33271343)
chr6 (1-140)||(33398426-33398565)
chr6 (11-140)||(33358295-33358423)
chr6 (89-243)||(31563227-31563381)
chr6 (6-134)||(33056937-33057062)
chr6 (10-59)||(31563391-31563440)
chr6 (208-287)||(33358494-33358567)
chr6 (192-246)||(33409529-33409583)
[»] scaffold1408 (1 HSPs)
scaffold1408 (10-149)||(7-146)
[»] scaffold0428 (2 HSPs)
scaffold0428 (10-149)||(5753-5892)
scaffold0428 (11-149)||(13018-13156)
[»] chr4 (4 HSPs)
chr4 (81-138)||(31485298-31485355)
chr4 (10-151)||(31499553-31499694)
chr4 (67-138)||(31479558-31479629)
chr4 (10-54)||(31156544-31156588)


Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 17441543 - 17441143
Alignment:
Q  1 ttcttgttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  17441543 ttcttgttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggttttttcgtgattcatcattgttaagttgaactcttgtagg 17441444  T
Q  101 tcttgtttacatacccaacgatacccgcaactcttcaccttcatacccaaagcttgccccttaaaaatttcaaaactgatttctcgaaatgcatgatagg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  17441443 tcttgtttacatacccaacgatacccgcaactcttcacctccatacccaaagcttgcccctcaaaaatttcaaaacggatttctcgaaatgcatgatagg 17441344  T
Q  201 actcacagtggaagtagattatccataggtgacttgatttggttgttatcgtaacaagacttccattgagaattaccggaacactcacagttattctact 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17441343 actcacagtggaagtagattatccatatgtgacttgatttggttgttatcgtaacaagacttccattgagaattaccggaacactcacagttattctact 17441244  T
Q  301 cagagacttatccgacttatgcttattaaatggatatttcaaaaccagttccatatgggccaacgatggaaacctcccacgatgaggtgccatggaaaat 400  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17441243 cagagacttatctgacttacgcttattaaatggatatttcaaaaccagttccatatgggccgacgatggaaacctcccacgatgaggtgccatggaaaat 17441144  T
Q  401 a 401  Q
    |    
T  17441143 a 17441143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 17447048 - 17446954
Alignment:
Q  23 tcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttacataccca 117  Q
    ||||||||| | |||||||||||||||||||||||||       || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17447048 tcttcaatttcaaaaatcttgcacttctgagccaaggaattttcgttattcaacattgttaagttgaactcttgtaggtcttgtttacataccca 17446954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 33387537 - 33387806
Alignment:
Q  12 gttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttaca 111  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||       |||||| ||||||| ||||||||| ||||||||||||||||||||    
T  33387537 gttgtgtcccatcttcaattgccaaaatcttacacttcggagccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttaca 33387636  T
Q  112 tacccaacgatacccgcaactcttcaccttcatacccaaagcttgccccttaaaaatttcaaaactgatttctcgaaatgcatgataggactcacagtgg 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| | || |||| |||   ||||||| |   ||    
T  33387637 tacccaacgatacccgcaactcttcacctccatacccaaagcttgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtggg 33387736  T
Q  212 aagtagattatccataggtgacttgatttggttgttatcgtaacaagacttccattgagaattaccggaacactca 287  Q
    |||||||||||||||||||||||||||||||      |||||||||||| |||||||||||| || ||||||||||    
T  33387737 aagtagattatccataggtgacttgatttgg------tcgtaacaagacctccattgagaatgactggaacactca 33387806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 33303855 - 33304119
Alignment:
Q  6 gttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttg 105  Q
    |||||||||||||||||||||||||||||||| |||||||||||  |||||||         ||||||||||||||||||||||| ||||| |||||||     
T  33303855 gttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagccaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttc 33303954  T
Q  106 tttacatacccaacgatacccgcaactcttcaccttcatacccaaagcttgccccttaaaaatttcaaaactgatttctcgaaatgcatgataggactca 205  Q
    |||||||||||| |||||||||||||||||||||| || ||  ||| |||  |||| |||||| | ||||  ||||| |  |||| ||  |||||||||     
T  33303955 tttacatacccaccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactct 33304054  T
Q  206 cagtggaagtagattatccataggtgacttgatttggttgttatcgtaacaagacttccattgagaattac 276  Q
    | | |||||||||||||||||||||||||||||||||      || ||||||||| |||||||||||||||    
T  33304055 cgggggaagtagattatccataggtgacttgatttgg------tcataacaagacctccattgagaattac 33304119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 33645128 - 33644952
Alignment:
Q  67 gtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcaccttcatacccaaagcttgccccttaaaa 166  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| || || ||||    
T  33645128 gtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccagaccttccctctcaaaa 33645029  T
Q  167 atttcaaaactgatttctcgaaatgcatgataggactcacagtggaagtagattatccataggtgacttgatttggt 243  Q
    || ||||||  ||||  || |||| ||| |||||| || |   ||||||||||||||||||||||||||||||||||    
T  33645028 atgtcaaaatagattcttccaaattcattataggaatctcgagggaagtagattatccataggtgacttgatttggt 33644952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 28870806 - 28870678
Alignment:
Q  11 ggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttac 110  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||    
T  28870806 ggttgtgtcccatcttcaatttccaaaatcttgaacttctgagccaaggaatttttgtg-ttcatcattgttaagttgaactcttgtaggtcttgtttac 28870708  T
Q  111 atacccaacgatacccgcaactcttcacct 140  Q
    ||||||||||||||||||||||||||||||    
T  28870707 atacccaacgatacccgcaactcttcacct 28870678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 33261980 - 33262117
Alignment:
Q  10 tggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgttta 109  Q
    ||||||||||||||||||||||||||||||||| || |||  ||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  33261980 tggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaggtcttgttta 33262079  T
Q  110 catacccaacgatacccgcaactcttcaccttcatacc 147  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  33262080 catacccaatgatacccgcaactcttcacctccatacc 33262117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 33407756 - 33407882
Alignment:
Q  23 tcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgat 122  Q
    ||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  33407756 tcttcaatttccaaaatcttgcacttctgagccaaggaattttcgtgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33407855  T
Q  123 acccgcaactcttcaccttcataccca 149  Q
    ||||||| |||||||||||| ||||||    
T  33407856 acccgcagctcttcaccttcgtaccca 33407882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 33409338 - 33409477
Alignment:
Q  1 ttcttgttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtagg 100  Q
    |||| ||| ||||||||||||  |||||||||||| |||||| ||||||||||||||||        |||||||||||||| |||||||||| |||||||    
T  33409338 ttctggttgtggttgtgtctcgccttcaattgccataatcttacacttctgagccaaggaattttcatgattcatcattgtgaagttgaacttttgtagg 33409437  T
Q  101 tcttgtttacatacccaacgatacccgcaactcttcacct 140  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  33409438 tcttgtttacatacccaacgatacccgcaacttttcacct 33409477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 33284987 - 33285205
Alignment:
Q  25 ttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatac 124  Q
    ||||||||||| |||||| |||||| |||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  33284987 ttcaattgccataatcttacacttcggagccaaggatattttgtgattcatcattgttaaattgaactcttgtaggtcttgtttacatacccaacgatat 33285086  T
Q  125 ccgcaactcttcaccttcatacccaaagcttgccccttaaaaatttcaaaactgatttctcgaaatgcatgataggactcacagtggaagtagattatcc 224  Q
    || ||||| ||||||| |||||||||| |||  |||  || ||| | | ||||||||| |  ||||  || ||||||||| |    || |||||||||||    
T  33285087 ccacaactgttcacctccatacccaaatcttcacccccaacaatgtaacaactgattttttcaaatttatcataggactctctagagaggtagattatcc 33285186  T
Q  225 ataggtgacttgatttggt 243  Q
    |||| ||||||||||||||    
T  33285187 atagatgacttgatttggt 33285205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 33396806 - 33396932
Alignment:
Q  23 tcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgat 122  Q
    ||||||||| |||||||||||||||||||| ||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  33396806 tcttcaatttccaaaatcttgcacttctgaaccaaggaattttcatgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33396905  T
Q  123 acccgcaactcttcaccttcataccca 149  Q
    ||| ||| |||||||||| ||||||||    
T  33396906 acctgcagctcttcacctccataccca 33396932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 9166135 - 9166357
Alignment:
Q  18 tctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttacataccca 117  Q
    ||||||| | |||||||||| |||||||| || ||||||| |       ||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  9166135 tctcatcctaaattgccaaagtcttgcacgtccgagccaatgatttttcgtgattcatc---gttaagttgaactcttgtaggtcttgtttacataccca 9166231  T
Q  118 acgatacccgcaactcttcaccttcatacccaaagcttgccccttaaaaatttcaaaactgatttctcgaaatgcatgataggactcacagtggaagtag 217  Q
    ||| || || ||| |||||||||||||| ||||| |||  |||  || ||| ||||||  ||||| || |||| |||  |||||||| | | ||| ||||    
T  9166232 acggtatccacaagtcttcaccttcatatccaaaccttcaccccgaataatgtcaaaatggatttttccaaattcatcgtaggactctcgggggaggtag 9166331  T
Q  218 attatccataggtgacttgatttggt 243  Q
    ||||||||||||||||| ||||||||    
T  9166332 attatccataggtgactggatttggt 9166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 33281096 - 33281234
Alignment:
Q  11 ggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttac 110  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||        |||||||| ||||||||  ||||||||||||||||||||||||    
T  33281096 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtttac 33281195  T
Q  111 atacccaacgatacccgcaactcttcaccttcataccca 149  Q
    |||  ||||||| | ||||||||||||||| | ||||||    
T  33281196 atattcaacgatgcacgcaactcttcacctccgtaccca 33281234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 33271219 - 33271343
Alignment:
Q  26 tcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatacc 125  Q
    ||||||||||||||||| || ||  |||||||||       |||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||    
T  33271219 tcaattgccaaaatcttacattttggagccaaggaattttcgtgattcagcattgttatattgaactcttgtaggtcttgtttacatatccaacgatacc 33271318  T
Q  126 cgcaactcttcaccttcatacccaa 150  Q
    ||||||||||||||| |||||||||    
T  33271319 cgcaactcttcacctccatacccaa 33271343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 33398426 - 33398565
Alignment:
Q  1 ttcttgttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtagg 100  Q
    |||| ||| ||||||||||||  |||||||||||| |||||| ||||| ||||| ||||        |||||||||||||| ||||| |||| | |||||    
T  33398426 ttctggttgtggttgtgtctcgccttcaattgccataatcttacacttttgagcaaaggaattttcatgattcatcattgtgaagttcaactttcgtagg 33398525  T
Q  101 tcttgtttacatacccaacgatacccgcaactcttcacct 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33398526 tcttgtttacatacccaacgatacccgcaactcttcacct 33398565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 33358295 - 33358423
Alignment:
Q  11 ggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttac 110  Q
    ||||| |||| |||||||||||||||||||||||| |||  ||  |||        ||||||||||||||| |||||||||||||||||||||||||||     
T  33358295 ggttgcgtctaatcttcaattgccaaaatcttgcatttcccagttaagagattttcgtgattcatcattgtgaagttgaactcttgtaggtcttgttta- 33358393  T
Q  111 atacccaacgatacccgcaactcttcacct 140  Q
    | |||||||||||| | |||||||||||||    
T  33358394 aaacccaacgatactcacaactcttcacct 33358423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 31563381 - 31563227
Alignment:
Q  89 aactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcaccttcatacccaaagcttgccccttaaaaatttcaaaactgatttctcgaa 188  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||    ||  ||   ||  |||||| ||||||  ||||| |||||    
T  31563381 aactcttgtaggtcatgtttacatacccaacgatatccgcaactcttcaccctcataggtgaaattttagccgaaaaaatgtcaaaatggatttttcgaa 31563282  T
Q  189 atgcatgataggactcacagtggaagtagattatccataggtgacttgatttggt 243  Q
    || |||||   ||| | |   ||||||||||||||||||||||||||||||||||    
T  31563281 attcatgacgtgaccctcgagggaagtagattatccataggtgacttgatttggt 31563227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 33056937 - 33057062
Alignment:
Q  6 gttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttg 105  Q
    ||||||||||||||||||||||||||| |||||| ||||||||  |||  ||||       ||||||||| |   |||| ||||| |||||||  |||||    
T  33056937 gttctggttgtgtctcatcttcaattgtcaaaattttgcactttggagttaaggaatttttgtgattcatga---ttaaattgaattcttgtatatcttg 33057033  T
Q  106 tttacatacccaacgatacccgcaactct 134  Q
    |||||||||||||||||| ||||||||||    
T  33057034 tttacatacccaacgataaccgcaactct 33057062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 31563440 - 31563391
Alignment:
Q  10 tggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaagg 59  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  31563440 tggttgtgtctcatcttcaattgccaaattctttcacttccgagccaagg 31563391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 33358494 - 33358567
Alignment:
Q  208 gtggaagtagattatccataggtgacttgatttggttgttatcgtaacaagacttccattgagaattaccggaacactca 287  Q
    |||||||||||||||||| ||||||||||||||||       ||||| ||||| ||||||||||||||| ||||||||||    
T  33358494 gtggaagtagattatccacaggtgacttgatttgg------gcgtaataagacctccattgagaattactggaacactca 33358567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 33409529 - 33409583
Alignment:
Q  192 catgataggactcacagtggaagtagattatccataggtgacttgatttggttgt 246  Q
    ||| ||||||||| | | ||||||||| || ||||||||||||||||||||||||    
T  33409529 catcataggactctcgggggaagtagactagccataggtgacttgatttggttgt 33409583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 7 - 146
Alignment:
Q  10 tggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgttta 109  Q
    ||||||||||||||||||||||||||||||||| || |||  ||||||||        ||||||||||||||||||||||||||||||| || |||||||    
T  7 tggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttttgttta 106  T
Q  110 catacccaacgatacccgcaactcttcaccttcataccca 149  Q
    |||||||||||||||||||||| |||||| | ||||||||    
T  107 catacccaacgatacccgcaacacttcacatccataccca 146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 5753 - 5892
Alignment:
Q  10 tggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgttta 109  Q
    ||||||||||||||||||||||||||||||||| || |||  ||||||||        ||||||||||||||||||||||||||||||| || |||||||    
T  5753 tggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttttgttta 5852  T
Q  110 catacccaacgatacccgcaactcttcaccttcataccca 149  Q
    |||||||||||||||||||||| |||||| | ||||||||    
T  5853 catacccaacgatacccgcaacacttcacatccataccca 5892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 13156 - 13018
Alignment:
Q  11 ggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgtttac 110  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||        |||||||| ||||||||  ||||||||||||||||||||||||    
T  13156 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtttac 13057  T
Q  111 atacccaacgatacccgcaactcttcaccttcataccca 149  Q
    |||  ||||||| | ||||||||||||||| | ||||||    
T  13056 atattcaacgatgcacgcaactcttcacctccgtaccca 13018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 31485355 - 31485298
Alignment:
Q  81 ttaagttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcac 138  Q
    |||||||||||||||| || || || ||| ||||||||||||||||||||||||||||    
T  31485355 ttaagttgaactcttgcagatcctgcttaaatacccaacgatacccgcaactcttcac 31485298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 31499694 - 31499553
Alignment:
Q  10 tggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggnnnnnnngtgattcatcattgttaagttgaactcttgtaggtcttgttta 109  Q
    |||||||| |||||||||||||||||||  ||||| |||   ||| ||||       ||||||||||||||||||||| ||||||||||| || || |||    
T  31499694 tggttgtgcctcatcttcaattgccaaagacttgcgctttccagctaaggtatttctgtgattcatcattgttaagttcaactcttgtagatcatgctta 31499595  T
Q  110 catacccaacgatacccgcaactcttcaccttcatacccaaa 151  Q
     |||||||  | |||||| || | |||||||| ||| |||||    
T  31499594 tatacccagtggtacccgaaaattttcacctttataaccaaa 31499553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 31479629 - 31479558
Alignment:
Q  67 gtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcac 138  Q
    |||||||||| ||||||||||||| |||||||| || |||||| | |||||||| ||||| ||| |||||||    
T  31479629 gtgattcatctttgttaagttgaattcttgtagatcctgtttataaacccaacggtacccacaattcttcac 31479558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 31156544 - 31156588
Alignment:
Q  10 tggttgtgtctcatcttcaattgccaaaatcttgcacttctgagc 54  Q
    |||||||| |||||||||||||||||||| ||||| |||| ||||    
T  31156544 tggttgtgcctcatcttcaattgccaaaaacttgcgcttccgagc 31156588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University