View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8466_high_8 (Length: 393)

Name: NF8466_high_8
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8466_high_8
NF8466_high_8
[»] chr8 (11 HSPs)
chr8 (1-197)||(479431-479627)
chr8 (259-375)||(479689-479805)
chr8 (8-182)||(466498-466672)
chr8 (264-356)||(466743-466835)
chr8 (1-183)||(473957-474139)
chr8 (77-173)||(445767-445863)
chr8 (1-65)||(454786-454850)
chr8 (116-182)||(454890-454956)
chr8 (269-349)||(455041-455121)
chr8 (268-312)||(474232-474276)
chr8 (264-363)||(446009-446108)
[»] chr2 (2 HSPs)
chr2 (8-185)||(27493754-27493931)
chr2 (269-354)||(27493536-27493624)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 479431 - 479627
Alignment:
Q  1 tgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479431 tgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagg 479530  T
Q  101 gtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtacttctctttcattgc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  479531 gtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtacttctatttcattgc 479627  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 479689 - 479805
Alignment:
Q  259 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479689 gtttcttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctag 479788  T
Q  359 taataataatataaacg 375  Q
    |||||||||||||||||    
T  479789 taataataatataaacg 479805  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 466498 - 466672
Alignment:
Q  8 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 107  Q
    |||||||||||||||| |||||||| | |||| |||||||| |||| |||| |||||||  |  | ||||||||||||| | | ||||| ||||| ||||    
T  466498 acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag 466597  T
Q  108 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 182  Q
     || |||||||||||||| ||||||  |||| ||||||||||| ||||||||||  | |||||||| || |||||    
T  466598 tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta 466672  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 466743 - 466835
Alignment:
Q  264 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctct 356  Q
    |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||||| |||||||||||||    
T  466743 ttgacaggagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttccattctct 466835  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 473957 - 474139
Alignment:
Q  1 tgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagg 100  Q
    ||||||||||||||||| ||  | |||||||||| |||||| |||||| ||||||||||||||||| ||  | |||||| |||| |     ||||| |||    
T  473957 tgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagg 474056  T
Q  101 gtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtac 183  Q
    || |||| || |   |||||||||| ||||||  |||| ||||||||||| ||||||||||  |||||||||| || ||||||    
T  474057 gtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtac 474139  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 445767 - 445863
Alignment:
Q  77 gcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttattt 173  Q
    |||||||||||| | ||||| ||||| |||||||   | |||||||| |||||||| ||||| ||||||||||| ||||||||||  ||||||||||    
T  445767 gcacaagaattgcacttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttattt 445863  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 454786 - 454850
Alignment:
Q  1 tgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcagg 65  Q
    ||||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||| ||||    
T  454786 tgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcagg 454850  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 454890 - 454956
Alignment:
Q  116 tatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta 182  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||  |||||||||| || |||||    
T  454890 tatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta 454956  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 455041 - 455121
Alignment:
Q  269 aggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc 349  Q
    |||||||| ||| |||||||||||||||||||||  |||||||| | | | ||| | ||||||||||||||||| ||||||    
T  455041 aggagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc 455121  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 474232 - 474276
Alignment:
Q  268 taggagaaattctggctcttattccttaaatttaaggagtttttc 312  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  474232 taggagaaactctgcctcttattccttaaatttaaggagtttttc 474276  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 446009 - 446108
Alignment:
Q  264 ttgataggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaata 363  Q
    |||| |||||||| |||| ||| || |||||||| |||||||||||||| | | ||||| | || ||||||||| |||| |||| |||| ||||||||||    
T  446009 ttgacaggagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttctagtaata 446108  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 27493931 - 27493754
Alignment:
Q  8 acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag 107  Q
    |||||||||||||| | |||||||||| |||| | |||||| |||| |||||| |||| |||  | |||| |||||||||||| ||||| ||||||||||    
T  27493931 acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag 27493832  T
Q  108 ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtactt 185  Q
     || | | |||||||||| || ||  ||||| ||||||||||| |||||||||||||||||||||| || ||||||||    
T  27493831 tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactt 27493754  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 27493624 - 27493536
Alignment:
Q  269 aggagaaattctggctctt---attccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattct 354  Q
    ||||||||||||||||| |   ||||||||||||||| ||||||||||| | ||||| | || |||||| ||||||| ||||| |||||    
T  27493624 aggagaaattctggctcctcccattccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttctattct 27493536  T

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