View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8466_low_15 (Length: 248)
Name: NF8466_low_15
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 54572565 - 54572319
Alignment:
| Q |
1 |
aaaattagattaaaagttgtaaaaagcaaacaaagtatttttgataactgagaaagtgtgaatgggg-attcatggaggaatgaaaatcaatgatataga |
99 |
Q |
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| T |
54572565 |
aaaatttgattaaaagttgtaaaaagcaaacaa-gtatttttgataactgagaaagtgtgaatgggggattcatggaggaatgaaaatcaatgatataga |
54572467 |
T |
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| Q |
100 |
tttgtcagtcctaaccaatgattcatggagaccctatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattat |
199 |
Q |
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| T |
54572466 |
tttgtcagtcctaaccaatgattcatggagaccctatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattat |
54572367 |
T |
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| Q |
200 |
ttactcttaaaaagtgaattaactacctatgaagcacaagcacatata |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54572366 |
ttactcttaaaaagtgaattaactacctatgaagcacaagcacatata |
54572319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 55155832 - 55155586
Alignment:
| Q |
1 |
aaaattagattaaaagttgtaaaaagcaaacaaagtatttttgataactgagaaagtgtgaatgg-ggattcatggaggaatgaaaatcaatgatataga |
99 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55155832 |
aaaatttgattaaaagttgtaaaaagcaaacaa-gtatttttgataactgagaaagtgtgaatggaggattcatggaggaatgaaaatcaatgatataga |
55155734 |
T |
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| Q |
100 |
tttgtcagtcctaaccaatgattcatggagaccctatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattat |
199 |
Q |
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| T |
55155733 |
tttgtcagtcctaaccaatgattcatggagaccctatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattat |
55155634 |
T |
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| Q |
200 |
ttactcttaaaaagtgaattaactacctatgaagcacaagcacatata |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55155633 |
ttactcttaaaaagtgaattaactacctatgaagcacaagcacatata |
55155586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 4097382 - 4097269
Alignment:
| Q |
8 |
gattaaaagttgtaaaaagcaaacaaagtatttttgataactgagaaagtgtgaatggggattcatggaggaatgaaaatcaatgatatagatttgtcag |
107 |
Q |
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||||||||||| | |||||||||||| |||||||||||||| |||||| |||||||||||||| | ||||||| |||||||||||| ||||||| |||| |
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| T |
4097382 |
gattaaaagttcttaaaagcaaacaac-tatttttgataactcagaaagcgtgaatggggattctttgaggaatcaaaatcaatgatttagatttctcag |
4097284 |
T |
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| Q |
108 |
tcctaaccaatgatt |
122 |
Q |
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|||||| |||||||| |
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| T |
4097283 |
tcctaatcaatgatt |
4097269 |
T |
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