View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8466_low_18 (Length: 244)
Name: NF8466_low_18
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 35906925 - 35906720
Alignment:
| Q |
4 |
actcaagatttataccaaaggattttatgggatttataacacagatcttgaagatttcaatggattttattggatttataattcagacttttaggatttc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35906925 |
actcaagatttataccaaaggattttatgggatttataacaaagatcttgaagatttcaatggattttattggatttataattcagacttttaggatttc |
35906826 |
T |
|
| Q |
104 |
aaatgactcattgacattacgtaaaccctatacatagcatcaagacgtgcaacaactccatagttttattcaggtacaagctatatacctatctttgtct |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
35906825 |
aaatgactcattgacatcacgtaaaccctatacatagcataaagacgtgcaacaactccatagttttatccaggttcaagctatatacctatctttgtcc |
35906726 |
T |
|
| Q |
204 |
ttcccc |
209 |
Q |
| |
|
|||||| |
|
|
| T |
35906725 |
ttcccc |
35906720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 28846255 - 28846460
Alignment:
| Q |
4 |
actcaagatttataccaaaggattttatgggatttataacacagatcttgaagatttcaatggattttattggatttataattcagacttttaggatttc |
103 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28846255 |
actcaatatttataccaaaggattttatgggatttataacacagatcttgaagatttcaatggattttattggatttataattcagacttttagaatttc |
28846354 |
T |
|
| Q |
104 |
aaatgactcattgacattacgtaaaccctatacatagcatcaagacgtgcaacaactccatagttttattcaggtacaagctatatacctatctttgtct |
203 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |
|
|
| T |
28846355 |
aaatgactcattaccatcacgtaaaccctatacatagcatcaagacgtgcaacaactccatagttttatccaggttcaagttatatacctatctttgttt |
28846454 |
T |
|
| Q |
204 |
ttcccc |
209 |
Q |
| |
|
|||||| |
|
|
| T |
28846455 |
ttcccc |
28846460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 52178297 - 52178216
Alignment:
| Q |
33 |
ggatttataacacagatcttgaagatttcaatggattttattggatttataattcagacttttaggatttcaaatgactcattg |
116 |
Q |
| |
|
|||||||||| | ||| || |||||||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
52178297 |
ggatttataaaatagacatttaagatttcaatgaattttattggatttataactcaaacttttaggatt--aaatgactcattg |
52178216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University