View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8466_low_2 (Length: 555)
Name: NF8466_low_2
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 40111674 - 40112192
Alignment:
| Q |
20 |
gaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaatttttcatatggtattgag |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40111674 |
gaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaaaatttttcatatggtatttag |
40111773 |
T |
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| Q |
120 |
agatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattggtccaagtggtaaggaactc |
219 |
Q |
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| T |
40111774 |
agatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaattgttccaagtggtaaggaactc |
40111873 |
T |
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| Q |
220 |
aaatcccttaagcatgtcgttaattggatcatgcttatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatatgttttcgaacgag |
319 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40111874 |
aaatcccttaagcatgtcgttaattggatcatgcgtatggagaaaaaatctgttgggcggggagaatccaccttatgtgccctatatgttttcgacggag |
40111973 |
T |
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| Q |
320 |
attagttattgttaaacggtggtggaaacttctaaccaatataatggtnnnnnnntaaccatgattaaaaacaaatgaatataaatagcaacatagcttg |
419 |
Q |
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| T |
40111974 |
attagttattgttaaacggcggtggaaacttctaaccaatataatggtaaaaaaataaccatgattaaaaacaaatgaatataaatagcaacatagcttg |
40112073 |
T |
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| Q |
420 |
caccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttggaacc |
519 |
Q |
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| T |
40112074 |
caccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttggaacc |
40112173 |
T |
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| Q |
520 |
gagaatccgcaccaccaaa |
538 |
Q |
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| T |
40112174 |
gagaatccgcaccaccaaa |
40112192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 441 - 538
Target Start/End: Original strand, 40149794 - 40149891
Alignment:
| Q |
441 |
cttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttggaaccgagaatccgcaccaccaaa |
538 |
Q |
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| T |
40149794 |
cttaccaattgggcttcaaatttgcagccacgtataaccaataaccagatgttccgataatcaaagcattcttggatccgagaatccgcaccaccaaa |
40149891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 40156168 - 40156264
Alignment:
| Q |
442 |
ttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttggaaccgagaatccgcaccaccaaa |
538 |
Q |
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| T |
40156168 |
ttaccaattgggcttcaaatttgcagccaggtataaccaataacccgaagttccaacaatcaaagcattcttggatccgagaatccgcaccaccaaa |
40156264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 43460320 - 43460271
Alignment:
| Q |
187 |
caacaatgaattggtccaagtggtaaggaactcaaatcccttaagcatgt |
236 |
Q |
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| T |
43460320 |
caacaatggattggtccaagtggtaagggacttgaaccccttaagcatgt |
43460271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 32729359 - 32729307
Alignment:
| Q |
315 |
acgagattagttattgttaaacggtggtggaaacttctaaccaatataatggt |
367 |
Q |
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| T |
32729359 |
acgagattagtcattgttaagcggttgtggaaacttcataccaatatcatggt |
32729307 |
T |
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