View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8466_low_21 (Length: 230)
Name: NF8466_low_21
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 9061117 - 9061045
Alignment:
| Q |
68 |
attattcacgaccactttagttcatttcaacatatgaatataagtacaagaaagagaataataattttacgaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9061117 |
attattcacgaccactttagttcatttcaacatatgaatataagtaaaagaaagagaataataattttacgaa |
9061045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 9062070 - 9062028
Alignment:
| Q |
26 |
tgtgtgggtgaaacgttgctattctgtgtacaaatactctcca |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9062070 |
tgtgtgggtgaaacgttgctattctgtgtacaaatactctcca |
9062028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 9061014 - 9060979
Alignment:
| Q |
150 |
aagaagttaaaaagaaatatattaccaccacaaaag |
185 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9061014 |
aagaagttaaaatgaaatatattaccaccacaaaag |
9060979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 19477552 - 19477508
Alignment:
| Q |
157 |
taaaaagaaatatattaccaccacaaaaggtccttcctagaataa |
201 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
19477552 |
taaaatgaaatatattaccacaacaaaaagtccttcctagcataa |
19477508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University