View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8466_low_22 (Length: 202)

Name: NF8466_low_22
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8466_low_22
NF8466_low_22
[»] chr7 (1 HSPs)
chr7 (20-180)||(25960134-25960294)
[»] chr1 (4 HSPs)
chr1 (102-180)||(17949711-17949789)
chr1 (113-170)||(17949697-17949754)
chr1 (115-173)||(17854260-17854318)
chr1 (124-180)||(17949735-17949791)
[»] scaffold0098 (3 HSPs)
scaffold0098 (116-180)||(11570-11634)
scaffold0098 (102-157)||(11569-11624)
scaffold0098 (95-180)||(8170-8255)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 25960294 - 25960134
Alignment:
Q  20 ggataaagctaaaggaattggttgttgctcatgaaaatgnnnnnnnttcttgggaaaaccatgtaagcggtactaatgcaactgagaattgtcccgaagg 119  Q
    |||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25960294 ggatgaagctaaaggaattggttgttgctcatgaaaatgaaaaattttcttgggaaaaccatgtaagcggtacttatgcaactgagaattgtcccgaagg 25960195  T
Q  120 aagaaatgagaattggtccaagggaaggaatgagaattggaccgaaggaaggaacgagaat 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25960194 aagaaatgagaattggtccaagggaaggaatgagaattggaccgaaggaaggaacgagaat 25960134  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 17949789 - 17949711
Alignment:
Q  102 tgagaattgtcccgaaggaagaaatgagaattggtccaagggaaggaatgagaattggaccgaaggaaggaacgagaat 180  Q
    |||||||||  | ||||||||||||||||| |||||| | |||||||||||||||||| | || ||||| || ||||||    
T  17949789 tgagaattggtcggaaggaagaaatgagaactggtccgaaggaaggaatgagaattggtcggagggaagaaatgagaat 17949711  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 17949754 - 17949697
Alignment:
Q  113 ccgaaggaagaaatgagaattggtccaagggaaggaatgagaattggaccgaaggaag 170  Q
    |||||||||| ||||||||||||||  ||||||| |||||||||||| | ||||||||    
T  17949754 ccgaaggaaggaatgagaattggtcggagggaagaaatgagaattggtctgaaggaag 17949697  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 17854260 - 17854318
Alignment:
Q  115 gaaggaagaaatgagaattggtccaagggaaggaatgagaattggaccgaaggaaggaa 173  Q
    ||||||||||||||||| |||||  | |||||||||||||||||| |||| | ||||||    
T  17854260 gaaggaagaaatgagaactggtctgaaggaaggaatgagaattggtccgatgaaaggaa 17854318  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 17949791 - 17949735
Alignment:
Q  124 aatgagaattggtccaagggaaggaatgagaattggaccgaaggaaggaacgagaat 180  Q
    ||||||||||||||  | ||||| |||||||| ||| ||||||||||||| ||||||    
T  17949791 aatgagaattggtcggaaggaagaaatgagaactggtccgaaggaaggaatgagaat 17949735  T

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Target: scaffold0098 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 11634 - 11570
Alignment:
Q  116 aaggaagaaatgagaattggtccaagggaaggaatgagaattggaccgaaggaaggaacgagaat 180  Q
    |||||| |||||||||||||||  | ||||| |||||||||||| | ||||||||||| ||||||    
T  11634 aaggaaaaaatgagaattggtcagaaggaagaaatgagaattggtctgaaggaaggaatgagaat 11570  T

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Target: scaffold0098; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 11624 - 11569
Alignment:
Q  102 tgagaattgtcccgaaggaagaaatgagaattggtccaagggaaggaatgagaatt 157  Q
    |||||||||  | |||||||||||||||||||||||  | ||||||||||||||||    
T  11624 tgagaattggtcagaaggaagaaatgagaattggtctgaaggaaggaatgagaatt 11569  T

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Target: scaffold0098; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 8255 - 8170
Alignment:
Q  95 atgcaactgagaattgtcccgaaggaagaaatgagaattggtccaagggaaggaatgagaattggaccgaaggaaggaacgagaat 180  Q
    |||||| |||||||||  |  ||||||  ||||||||||||||  | ||||| ||||| |||||||| ||||||||||| ||||||    
T  8255 atgcaaatgagaattggtcgaaaggaaagaatgagaattggtcagaaggaagaaatgaaaattggactgaaggaaggaaagagaat 8170  T

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