View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8466_low_5 (Length: 530)
Name: NF8466_low_5
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_low_5 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 53 - 515
Target Start/End: Complemental strand, 42269479 - 42269017
Alignment:
| Q |
53 |
cattgattaaaatataaaataaaactggtaattatttttattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggattta |
152 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42269479 |
cattgattaaaatataaaataaaactggtaattatttttattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggattta |
42269380 |
T |
|
| Q |
153 |
ccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttaggcctttgatttggtgtatcactagaatt |
252 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42269379 |
ccctcttccttgaatgcttctagagatacatttaagtattgaatctgctaggtctcttgatcaatctcttgggcctttgatttggtgtatcactagaatt |
42269280 |
T |
|
| Q |
253 |
tgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatgagatcctatttgctttgtaccacaaacctcaatggtt |
352 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
42269279 |
tgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatgagatcctatttgctttgtaacacaagcctcaatggtt |
42269180 |
T |
|
| Q |
353 |
cgtgtacattcatttgagtgatgttgcattgatggatttactacctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcct |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42269179 |
cgtgtacattcatttgagtgatgttgcattgatggatttactacctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcct |
42269080 |
T |
|
| Q |
453 |
gctgaccctggtccttgacatcacttgcacatccctcagattcattttctgaaataggctgat |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
42269079 |
gctgaccctggtccttgacatcacttgcacatccctcatattcattttctgaaataggttgat |
42269017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 42281287 - 42280786
Alignment:
| Q |
18 |
gatataggatattgagacactaattgtcttcatgccattgattaaaatataaaataaaac--tggtaattatttttattcttatgctttttcaggtacta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||| ||||||||||||||| ||||||||||||||| |
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| T |
42281287 |
gatataggatattgagacactaattgtcttcatcccattgattaaaatataaaaaaaaaaattgctaactatttttattcttatcctttttcaggtacta |
42281188 |
T |
|
| Q |
116 |
atggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42281187 |
atggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagatatacatttaagtattgaatctgctaggtctcttgatca |
42281088 |
T |
|
| Q |
216 |
atctcttaggcctttgatttggtgtatcactagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatg |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281087 |
atctcttaggcctttgatttggtctatcactagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatg |
42280988 |
T |
|
| Q |
316 |
agatcctatttgctttgtaccacaaacctcaatggttcgtgtacattcatttgagtgatgttgcattgatggatttactacctttcggtcttttttgttt |
415 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |
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| T |
42280987 |
agatcctatttgctttgtaacacaagcctcaatggttcgtgtacattcatttgagtgatgttgcattgatggttttactaccttttgatcttttttgttt |
42280888 |
T |
|
| Q |
416 |
ctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattcattttctgaaataggctgat |
515 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42280887 |
ctcctcgcatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattcattttctgaaataggttgat |
42280788 |
T |
|
| Q |
516 |
ct |
517 |
Q |
| |
|
|| |
|
|
| T |
42280787 |
ct |
42280786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 42254926 - 42254612
Alignment:
| Q |
18 |
gatataggatattgagacactaattgtcttcatgccattgattaaaa-tataaaataaaactggtaattatttttattcttatgctttttcaggtactaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| || ||| ||||||||||||||| |||||||||||||||| |
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| T |
42254926 |
gatataggatattgagacactaattgtcttcatcccattgattaaaaatataaaagaaaattgctaactatttttattcttatcctttttcaggtactaa |
42254827 |
T |
|
| Q |
117 |
tggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42254826 |
tggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgcttatagagatacatttaagtattgaatctgctaggtctcttgatcaa |
42254727 |
T |
|
| Q |
217 |
tctcttaggcctttgatttggtgtatcactagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42254726 |
tctcttaggcctttgatttggtgtatcactagaatttgtacccacctttattggaccatttttgtctcttgtattaggtccctcttgatttgtatcatgg |
42254627 |
T |
|
| Q |
317 |
gatcctatttgcttt |
331 |
Q |
| |
|
||||||||||||||| |
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| T |
42254626 |
gatcctatttgcttt |
42254612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 42260445 - 42260156
Alignment:
| Q |
18 |
gatataggatattgagacactaattgtcttcatgccattgattaaaatataaaataaaactggtaattatttttattcttatgctttttcaggtactaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||| | ||||| |||||||| |
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| T |
42260445 |
gatataggatattgagacactaattgtcttcgatccattgattaaaatataaaagaaaattcctaattatttttattcttatccattttctggtactaaa |
42260346 |
T |
|
| Q |
118 |
ggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaat |
217 |
Q |
| |
|
|| | | | ||||||||||||||||||||| ||| |||||||| ||||| ||| ||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
42260345 |
gg------aca-acttgtatcagctcatggatttatcctattccttga-tgctaatagcaatatatttaattattgaatctgctaggtctcttgatcaat |
42260254 |
T |
|
| Q |
218 |
ctcttaggcctttgatttggtgtatcactagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatg |
315 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42260253 |
ctcttgggcctttgttttggtgtatcactagaatttgtatccacctttattggatcatttttgtttcttgtattaggtccctcttgatttgtatcatg |
42260156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 397 - 496
Target Start/End: Complemental strand, 42260139 - 42260040
Alignment:
| Q |
397 |
ctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattca |
496 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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|
| T |
42260139 |
ctttcgatcttttttgtttttccttacatcgatcttaaacacttttggcctatcctgctgaccctggtccatgacattacttgcacatccttcagattca |
42260040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 42272622 - 42272569
Alignment:
| Q |
18 |
gatataggatattgagacactaattgtcttcatgccattgattaaaatataaaa |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
42272622 |
gatataggatattgagacactaattgtcttcatcccattgattaaaatataaaa |
42272569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 42285656 - 42285603
Alignment:
| Q |
18 |
gatataggatattgagacactaattgtcttcatgccattgattaaaatataaaa |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
42285656 |
gatataggatattgagacactaattgtcttcatcccattgattaaaatataaaa |
42285603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 42309947 - 42309885
Alignment:
| Q |
338 |
caaacctcaatggttcgtgtacattcatttgagtgatgttgcattgatggatttactaccttt |
400 |
Q |
| |
|
||||||||| | | || |||||||||||||||||||||||||| ||||| |||| ||| |||| |
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|
| T |
42309947 |
caaacctcactaggtcttgtacattcatttgagtgatgttgcactgatgaattttctatcttt |
42309885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 42313897 - 42313852
Alignment:
| Q |
355 |
tgtacattcatttgagtgatgttgcattgatggatttactaccttt |
400 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| ||| |||| |
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| T |
42313897 |
tgtacattcatttgagtggtgttgcactgatggattttctatcttt |
42313852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 489280 - 488991
Alignment:
| Q |
18 |
gatataggatattgagacactaattgtcttcatgccattgattaaaatataaaataaaactggtaattatttttattcttatgctttttcaggtactaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||| | ||||| |||||||| |
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|
| T |
489280 |
gatataggatattgagacactaattgtcttcgatccattgattaaaatataaaagaaaattcctaattatttttattcttatccattttctggtactaaa |
489181 |
T |
|
| Q |
118 |
ggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagtattgaatctgctaggtctcttgatcaat |
217 |
Q |
| |
|
|| | | | ||||||||||||||||||||| ||| |||||||| ||||| ||| ||| |||||| ||||||||||||||||||||||||||||| |
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| T |
489180 |
gg------aca-acttgtatcagctcatggatttatcctattccttga-tgctaatagcaatatatttaattattgaatctgctaggtctcttgatcaat |
489089 |
T |
|
| Q |
218 |
ctcttaggcctttgatttggtgtatcactagaatttgtatccacctttattggaccatttttgtttcttgtattaggtccctcttgatttgtatcatg |
315 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
489088 |
ctcttgggcctttgttttggtgtatcactagaatttgtatccacctttattggatcatttttgtttcttgtattaggtccctcttgatttgtatcatg |
488991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 397 - 496
Target Start/End: Complemental strand, 488974 - 488875
Alignment:
| Q |
397 |
ctttcggtcttttttgtttctccttacatagatcttcaacactttgggcctatcctgctgaccctggtccttgacatcacttgcacatccctcagattca |
496 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
488974 |
ctttcgatcttttttgtttttccttacatcgatcttaaacacttttggcctatcctgctgaccctggtccatgacattacttgcacatccttcagattca |
488875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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