View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8466_low_6 (Length: 422)
Name: NF8466_low_6
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 31 - 408
Target Start/End: Complemental strand, 32665355 - 32664977
Alignment:
| Q |
31 |
aagtggtaaacacagtttaaaactcacgcacacatttgagagtttccgaattcgtactcgtattaaggtatt-caacttaacaatattgatattttcagt |
129 |
Q |
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| T |
32665355 |
aagtggtaaacacagtttaaaactcacgcacacatttgagagtttccgaattcgaactcgtattaaggtatttcaatctaacaatattgatattgtcagt |
32665256 |
T |
|
| Q |
130 |
tgcgttaggtctacaagcaaaaacactccgatttatttcaatagtaagtgtgaagtctaactttgttgatgctaatttatgttaaagaattcagttgatc |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32665255 |
tgcgttaggtctacaaacaaaaacactccgatttatttcgatagtaagtgtgaagtctaactttgttgatgctaatttatgttaaagaattcagttgatc |
32665156 |
T |
|
| Q |
230 |
atctttagtggagtctttcattcatcatgcattttttcgtgtataagagttgaattcaaaaccttatctgaatttggttccacttagtcgaacatatata |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32665155 |
atctttagtggagtctttcattcatcatgcattttttcgtgtataagagttgaattcaaaaccttatctgaatttggttccacttagccgaacatatata |
32665056 |
T |
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| Q |
330 |
gtacttcaatttaaattgaatagtgtgttatgctcaaattcattgcatttttaatgttcatggctttgacaaacaattt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32665055 |
gtacttcaatttaaattgaatagtgtgttatgctcaaattcattgcatttttaatgttcatggctttgacaaacaattt |
32664977 |
T |
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