View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8466_low_9 (Length: 367)
Name: NF8466_low_9
Description: NF8466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8466_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 26836067 - 26836355
Alignment:
| Q |
69 |
cccgagaatatagagcacacaagaacacagcaaaatcaatatggttcaccctacaatcaagggctacatcctcagacgaaaaagtaaacatatttcacta |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836067 |
cccgagaatatagagcacacaagaacacagcaaaatcaatatggttcaccctacaatcaagggctacatcctcagacgaaaaagtaaacatatttcacta |
26836166 |
T |
|
| Q |
169 |
tgttcttgtgaattacaggtaatattcagtaaacatatttataccactctctttctagtgtatacataaaacttttcaagttaacttttttaccgtattt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836167 |
tgttcttgtgaattacaggtaatattcagtaaacatatttataccactctctttcttgtgtatacataaaacttttcaagttaacttttttaccgtattt |
26836266 |
T |
|
| Q |
269 |
agattttagactattgggactatagtcctccttaaacaggagtcccaatacacgaaagagagaggatgcggaggcatcacacaggttct |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
26836267 |
agattttagactattgggactatagtcctccttaaacaggagtcccaatacacgaaagagagaggatgcggaggtatcacacagattct |
26836355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 41880991 - 41880921
Alignment:
| Q |
80 |
agagcacacaagaacacagcaaaatcaatatggttcaccctacaatcaagggctacatcctcagacgaaaa |
150 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41880991 |
agagcacacaagaacacaacaaaatcaatatggttcaccctacaatcaaaggctacatcctcagacgaaaa |
41880921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 50316042 - 50316112
Alignment:
| Q |
80 |
agagcacacaagaacacagcaaaatcaatatggttcaccctacaatcaagggctacatcctcagacgaaaa |
150 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50316042 |
agagcacacaagaacacaacaaaatcaatatggttcaccctacaatcaaaggctacatcctcagacgaaaa |
50316112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University