View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8467_high_2 (Length: 412)
Name: NF8467_high_2
Description: NF8467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8467_high_2 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 5665960 - 5666355
Alignment:
| Q |
1 |
gggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgtatttataagtagtttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5665960 |
gggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgtatttataagtagtttctt |
5666059 |
T |
|
| Q |
101 |
ttacacaacattcatttgtagttagatagtaacaaagcatgaattttaatttacagtaaacggcgaaggtacctggccggcatgaatcaaagccattaga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5666060 |
ttacacaacattcatttgtagttagatagtaaaaaagcatgaattttaatttacagtaaacggcgaaggtacctggccggcatgaatcaaagccattaga |
5666159 |
T |
|
| Q |
201 |
gcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcatatattattttcatcattgtcatatcattttaaaaatatacc |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5666160 |
gcccatgatgtctgtacaatatttgattggcttccttcaagaggtgcatatatctgcatatattattttcatca--gtcatatcattttaaaaatatacc |
5666257 |
T |
|
| Q |
301 |
atgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctctctccccatccacc |
398 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5666258 |
atgcaattaatttagttcattattagtaaataataataattaattatttaactacaaaccttttttgagcttgaaagatggctctctccccatccacc |
5666355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 80 - 294
Target Start/End: Original strand, 5687047 - 5687257
Alignment:
| Q |
80 |
tgtatttataagtagtttcttttacacaacattcatttgtagttagatagtaacaaagcatgaattttaatttacagtaaacggcgaaggtacctggccg |
179 |
Q |
| |
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|||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | || ||||||||||||||| |
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| T |
5687047 |
tgtattcattagtagttt-ttttacacaacattcatttgtagttatatagtaacaaagcatgaattttaatttacaatgacaggtgaaggtacctggccg |
5687145 |
T |
|
| Q |
180 |
gcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcatatattattttcatcattgtc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | | |||||| |
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| T |
5687146 |
gcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat-tat--tttccttaattgtc |
5687242 |
T |
|
| Q |
280 |
atatcattttaaaaa |
294 |
Q |
| |
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||||||||||||||| |
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| T |
5687243 |
atatcattttaaaaa |
5687257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 80 - 294
Target Start/End: Original strand, 5719163 - 5719374
Alignment:
| Q |
80 |
tgtatttataagtagtttcttttacacaacattcatttgtagttagatagtaacaaagcatgaattttaatttacagtaaacggcgaaggtacctggccg |
179 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| || |||||||||||||| |
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| T |
5719163 |
tgtattcattagtagttttttttacacaacattcatttgtagttagatagtgacaaagcatgaattttaatttaaaataacaggtgaaggtacctggcca |
5719262 |
T |
|
| Q |
180 |
gcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcatatattattttca-tcattgt |
278 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
5719263 |
gcatgaatcaaagctattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtacatatatctgc----attattttcattcattgt |
5719358 |
T |
|
| Q |
279 |
catatcattttaaaaa |
294 |
Q |
| |
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||| |||||| ||||| |
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| T |
5719359 |
catgtcatttaaaaaa |
5719374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 285 - 398
Target Start/End: Original strand, 5719431 - 5719541
Alignment:
| Q |
285 |
attttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctc |
384 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
5719431 |
attttaaaaatataccatgcaattgatttagttcattattagtaaata---ataattaaatatttaacgacaaaccttttttgagcatgaaagatggctc |
5719527 |
T |
|
| Q |
385 |
tctccccatccacc |
398 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
5719528 |
tctccccacccacc |
5719541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 285 - 398
Target Start/End: Original strand, 5687315 - 5687425
Alignment:
| Q |
285 |
attttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctc |
384 |
Q |
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|
||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
5687315 |
atttttaatatataccatgcaattaatttagttcattattagtaaata---ataattaattatttaaagacaaaccttttttgagcatgaaagatggctc |
5687411 |
T |
|
| Q |
385 |
tctccccatccacc |
398 |
Q |
| |
|
|||||||| ||||| |
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| T |
5687412 |
tctccccacccacc |
5687425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5719050 - 5719132
Alignment:
| Q |
1 |
gggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgta |
83 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719050 |
gggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgta |
5719132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5686934 - 5687016
Alignment:
| Q |
1 |
gggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctgta |
83 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5686934 |
gggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagggtctctctccgcctgta |
5687016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 5652558 - 5652646
Alignment:
| Q |
171 |
acctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat |
259 |
Q |
| |
|
|||||||| |||||||| ||| |||| ||||||||||| || || |||||||||||| | | |||||| |||||||||||| ||||||| |
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|
| T |
5652558 |
acctggccagcatgaattaaacccataagagcccatgcagtttgaacaatatttgatcgacctccttcgagaggtacatatgtctgcat |
5652646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5652178 - 5652258
Alignment:
| Q |
1 |
gggccaatcaccctcctttagttggagattgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg |
81 |
Q |
| |
|
|||||| |||||||| | || |||| |||||||||||||||| ||||||||||||||| ||| | |||| |||||||||| |
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| T |
5652178 |
gggccagtcaccctcttctaattgggaattgatgattaattttgcagcacgatgaagagtagttgggtctatctccgcctg |
5652258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 5601550 - 5601497
Alignment:
| Q |
28 |
attgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg |
81 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||| |||| ||| |||||| |
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|
| T |
5601550 |
attgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgcctg |
5601497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 5639070 - 5639123
Alignment:
| Q |
28 |
attgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg |
81 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||| |||| ||| |||||| |
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| T |
5639070 |
attgataattaaatttgcagcacgatgaagaggagtagggtctatcttcgcctg |
5639123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 106232 - 106145
Alignment:
| Q |
172 |
cctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat |
259 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||| || ||||||| ||| ||| |||||||||| |||||||||||||||||||| |
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|
| T |
106232 |
cctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatcggcttccttcgagaggtacatatatctgcat |
106145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 166816 - 166763
Alignment:
| Q |
28 |
attgatgattaattttacagcacgatgaagaggagtagcgtctctctccgcctg |
81 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
166816 |
attgatgagcaattttgcagcacgatgaagaggagtagggtctctctctgcctg |
166763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 166757 - 166697
Alignment:
| Q |
181 |
catgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaag |
241 |
Q |
| |
|
||||||| |||||||| ||||||||||| || ||||||| |||||| | ||||||||||| |
|
|
| T |
166757 |
catgaattaaagccataagagcccatgcagtttgtacaacatttgaccgccttccttcaag |
166697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 90397 - 90488
Alignment:
| Q |
171 |
acctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttga---ttggcttccttcaagaggtacatatatctgcat |
259 |
Q |
| |
|
|||||||| |||||||| ||| |||| ||||||||||| || ||||||| |||||| ||||||||||||||||||||||||| |||||| |
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| T |
90397 |
acctggccagcatgaattaaacccataagagcccatgcagtttgtacaacatttgactcctggcttccttcaagaggtacatatacctgcat |
90488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 12135539 - 12135627
Alignment:
| Q |
171 |
acctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcat |
259 |
Q |
| |
|
|||||||| |||||||| ||| ||| ||||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||| |
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|
| T |
12135539 |
acctggccagcatgaattaaacccagaagagcccatgcagtctgtacaagatttgatctacttccttcaagaggtatgtatatctgcat |
12135627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 13054859 - 13054767
Alignment:
| Q |
170 |
tacctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattg---gcttccttcaagaggtacatatatctgcat |
259 |
Q |
| |
|
||||||||| |||| ||| ||| ||| ||| ||||||| || ||||||| ||||||||| ||||||||||||||||| |||| ||||||| |
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|
| T |
13054859 |
tacctggccagcataaattaaactcatgagaccccatgcagtttgtacaacatttgattgctggcttccttcaagaggtatatatttctgcat |
13054767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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