View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8467_low_1 (Length: 688)
Name: NF8467_low_1
Description: NF8467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8467_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 236 - 560
Target Start/End: Complemental strand, 1106954 - 1106630
Alignment:
| Q |
236 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttctttcacgttcattccgctatggacgtgtctgtccatcattgct |
335 |
Q |
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| T |
1106954 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttcttccacgttcattccgctatggaagtgtctgtccatcattgat |
1106855 |
T |
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| Q |
336 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtatagtgatgggcctgtctctttgtcat |
435 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1106854 |
agtgaaaaataagaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtatagtgatgggcctgtctctttgtcat |
1106755 |
T |
|
| Q |
436 |
aacctgcaagaaggatgttcacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttatctataatcacaatgcaacatggt |
535 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1106754 |
aaccagcaagaaggatgttcacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttatctataatcacaatgcaacatggt |
1106655 |
T |
|
| Q |
536 |
taatgaattgcagcaaaacaacata |
560 |
Q |
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||||||||||||||||||||||||| |
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| T |
1106654 |
taatgaattgcagcaaaacaacata |
1106630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 236 - 593
Target Start/End: Complemental strand, 3736125 - 3735768
Alignment:
| Q |
236 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttctttcacgttcattccgctatggacgtgtctgtccatcattgct |
335 |
Q |
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| T |
3736125 |
cacaaccaaccttgatctgatttccgcaatgcacttatcaacaagatcaattgcttcttccacagacattccactatggtagtgtctgtccatcattgat |
3736026 |
T |
|
| Q |
336 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtatagtgatgggcctgtctctttgtcat |
435 |
Q |
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| T |
3736025 |
agtgaaaaataggaaccataaccaaaagcacccttttcaagcttgtgaagtgttgcaatgtagtcaatatagtatagtgatgggcctgtctctttgtcat |
3735926 |
T |
|
| Q |
436 |
aacctgcaagaaggatgttcacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaata----aactcgttatctataatcacaatgcaaca |
531 |
Q |
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|||| |||||||||||||||||||||||||| |||| || ||| ||| ||||||| || |||||| |||||||||| ||||||||||||||||| |
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| T |
3735925 |
aaccagcaagaaggatgttcacagagtaggggttctaaacaaa---aacaaaattcaagtataaatacgctcactcgttatcaataatcacaatgcaaca |
3735829 |
T |
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| Q |
532 |
tggttaatgaattgcagcaaaacaacataaatctaagcatatcaatagctggatttataaaa |
593 |
Q |
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| T |
3735828 |
tggctaatgaattctag-gaaacaacatgaacctaagcatatcagtagctcaatttataaaa |
3735768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 593 - 674
Target Start/End: Complemental strand, 1106632 - 1106551
Alignment:
| Q |
593 |
atattttaattcttttccacaattctacggatcaatatccggataggtaagtcatagtgtgttgtgtcgcccatggtcatgg |
674 |
Q |
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| T |
1106632 |
atattttaattcttttccacaattctacggatcaatatccggataggtaagtcatagtgtgttatgtcgcccatggtcatgg |
1106551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 236 - 512
Target Start/End: Original strand, 22981573 - 22981849
Alignment:
| Q |
236 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttctttcacgttcattccgctatggacgtgtctgtccatcattgct |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| | |
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| T |
22981573 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttcttccacgttcattccgctatggaagtgtttgtccatcattaat |
22981672 |
T |
|
| Q |
336 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtatagtgatgggcctgtctctttgtcat |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22981673 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtatagtgatgggcctgtttctttgtcat |
22981772 |
T |
|
| Q |
436 |
aacctgcaagaaggatgttcacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttat |
512 |
Q |
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| T |
22981773 |
aaccagcaagaaggatgttcacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttat |
22981849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 22842773 - 22842862
Alignment:
| Q |
49 |
caaagagaaaaactttgaaccctaa---cgacttctaagacaagcatcgat--agttgtttcaactttgaatccaactcatatgtttagc |
133 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||| || ||| |||||||||||||||| | ||||||||||||| |
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| T |
22842773 |
caaagagaaaaactttgaaccctaatattgacttctaagacatgcatcaatcgagtggtttcaactttgaatcttattcatatgtttagc |
22842862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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