View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8467_low_4 (Length: 251)

Name: NF8467_low_4
Description: NF8467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8467_low_4
NF8467_low_4
[»] chr2 (12 HSPs)
chr2 (1-238)||(39224457-39224694)
chr2 (16-238)||(39386437-39386661)
chr2 (3-216)||(39179472-39179687)
chr2 (94-216)||(39204564-39204687)
chr2 (16-137)||(39372018-39372139)
chr2 (35-161)||(39419976-39420101)
chr2 (35-154)||(39156676-39156795)
chr2 (89-161)||(39139804-39139876)
chr2 (87-161)||(39452079-39452153)
chr2 (87-161)||(39471658-39471732)
chr2 (14-71)||(39204501-39204557)
chr2 (52-101)||(39379672-39379721)
[»] chr5 (1 HSPs)
chr5 (16-216)||(33563121-33563328)
[»] chr7 (1 HSPs)
chr7 (89-161)||(19810063-19810135)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39224694 - 39224457
Alignment:
Q  1 acagacatgaaaattaaaaaattaagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39224694 acagacatgaaaattaaaaaattaagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaa 39224595  T
Q  101 tttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaatatgaagtctgtttggaaacaaaatgaagccaattacgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  39224594 tttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaatatgaagtctcttcggaaacaaaatgaagccaattacgta 39224495  T
Q  201 tcagttcaatttcatagcaacaactagtaccttgatct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39224494 tcagttcaatttcatagcaacaactagtaccttgatct 39224457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 39386437 - 39386661
Alignment:
Q  16 aaaaaattaagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttc-aattctgttt 114  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||| | |||||||  ||| |||||||||||||| || |||  ||    
T  39386437 aaaaaactaagcagattgaactgaatatttcaaaatttgtcaaaccatttagaaactagaagagatacataaaaggagagataaatttcgaagtctaatt 39386536  T
Q  115 cattttcaaagcattaaaaccaagctgtcaattttctcttaacaaatatgaagtctgtt-tggaaacaaaatgaagccaattacgtatcagttcaatttc 213  Q
    ||||||||||||||| ||| |||| |||  ||| ||| ||||||||   ||  ||||||  ||||||||||| |||||||||||  ||||||||||||||    
T  39386537 cattttcaaagcattgaaagcaagatgttgattatctattaacaaacgcgagatctgttggggaaacaaaatcaagccaattacaaatcagttcaatttc 39386636  T
Q  214 atagcaacaactagtaccttgatct 238  Q
    ||| |||| | ||||||||||||||    
T  39386637 ataccaaccaatagtaccttgatct 39386661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 39179687 - 39179472
Alignment:
Q  3 agacatgaaaattaaaaaat-taagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagaga--taa 99  Q
    |||||| ||||||||||||  |||||||| ||||||||| |||||| | ||| |||||||||||||||||||| | |||||||  ||||||||||  |||    
T  39179687 agacatcaaaattaaaaaaactaagcagattgaactgaacatttcacaatttatcaaaccatttagaaaatagaagagatacataaaaagagagagataa 39179588  T
Q  100 atttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaatatgaagtctgtttggaaacaaaatgaagccaattacgt 199  Q
    ||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||  | | |||  |||  | || || |||| |||||||||||| |    
T  39179587 atttcaagtctaattcattttcaaagcattaaaaccaagatgtcaattttctcttaa-gagtgtgagatcttctggggaaaaaaacgaagccaattacat 39179489  T
Q  200 atcagttcaatttcata 216  Q
    |||||||||||||||||    
T  39179488 atcagttcaatttcata 39179472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 39204564 - 39204687
Alignment:
Q  94 agataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaatatgaagtctgtt-tggaaacaaaatgaagcca 192  Q
    ||||||||||||| ||| ||||||| ||||||||||||||| ||| ||||||||||||| |||||||| |||  ||||||  ||||||||||||||||||    
T  39204564 agataaatttcaagtctatttcattctcaaagcattaaaacgaagatgtcaattttctcgtaacaaatgtgagatctgttggggaaacaaaatgaagcca 39204663  T
Q  193 attacgtatcagttcaatttcata 216  Q
    ||||| |||||||||||| |||||    
T  39204664 attacatatcagttcaatgtcata 39204687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 39372139 - 39372018
Alignment:
Q  16 aaaaaattaagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttcaattctgtttc 115  Q
    ||||||||||||||| || |||||||||||||||     |||||||||||| ||||||| | |||||||  ||| |||||||||||||||| |||| |||    
T  39372139 aaaaaattaagcagattgtactgaatatttcaaaaaaattcaaaccatttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttc 39372040  T
Q  116 attttcaaagcattaaaaccaa 137  Q
    | |||| |||||||||||||||    
T  39372039 actttccaagcattaaaaccaa 39372018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 39419976 - 39420101
Alignment:
Q  35 actgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttcaattctgtttcattttcaaagcattaaaac 134  Q
    ||||||||||| |||||  || |||||||||||||||| | | |||| |   |||||||||||||||||||| | | |||||||||  ||||||||| ||    
T  39419976 actgaatatttaaaattc-gttaaaccatttagaaaatggaagagatgcgtaaaaagagagataaatttcaagtatatttcattttacaagcattaacac 39420074  T
Q  135 caagctgtcaattttctcttaacaaat 161  Q
     ||| ||||||||||||||||||||||    
T  39420075 aaagatgtcaattttctcttaacaaat 39420101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 39156795 - 39156676
Alignment:
Q  35 actgaatatttcaaattttgtcaaaccatttagaaaatagtatagataca-agaaaagagagataaatttcaattctgtttcattttcaaagcattaaaa 133  Q
    |||||||||| |||| || |||| |||||||||||||| | | ||| ||| | ||||||||||| | |||||||||| |||||||||| ||||||||| |    
T  39156795 actgaatatt-caaacttcgtcataccatttagaaaatggaagagacacataaaaaagagagatcagtttcaattctatttcattttccaagcattaaca 39156697  T
Q  134 ccaagctgtcaattttctctt 154  Q
    ||||| |||||||||| ||||    
T  39156696 ccaagttgtcaattttgtctt 39156676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 39139876 - 39139804
Alignment:
Q  89 aagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaat 161  Q
    ||||||||| ||||| || ||| |||||||||| | ||||||| |||||| ||||||||||||||||||||||    
T  39139876 aagagagatgaatttgaagtctatttcattttccacgcattaacaccaagatgtcaattttctcttaacaaat 39139804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 39452153 - 39452079
Alignment:
Q  87 aaaagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaat 161  Q
    |||||||||||| ||||||| ||  |||||||||| ||||||||| || ||| ||||||||||| ||||||||||    
T  39452153 aaaagagagatacatttcaagtcaatttcattttccaagcattaacactaagatgtcaattttcccttaacaaat 39452079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 39471658 - 39471732
Alignment:
Q  87 aaaagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaat 161  Q
    ||||||||| |||| ||||  ||| |||||||||| || |||||| |||||| ||||||||||||||||||||||    
T  39471658 aaaagagaggtaaaattcatgtctatttcattttccaatcattaacaccaagatgtcaattttctcttaacaaat 39471732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 39204501 - 39204557
Alignment:
Q  14 ttaaaaaattaagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaa 71  Q
    |||||||| |||||||| | ||||||| |||| | |||||||||||||||||||||||    
T  39204501 ttaaaaaactaagcagatttaactgaacattt-acattttgtcaaaccatttagaaaa 39204557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 39379672 - 39379721
Alignment:
Q  52 ttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaat 101  Q
    ||||||||||||||||||||||| | |||||||  || ||||||||||||    
T  39379672 ttgtcaaaccatttagaaaatagaaaagatacataaatagagagataaat 39379721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 33563328 - 33563121
Alignment:
Q  16 aaaaaattaagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttcaattctgtttc 115  Q
    |||||| | |||||| ||||||||  |||||| | |||||||||||||||||||||||| | |||||||  ||| |||||||||||||||| ||| ||||    
T  33563328 aaaaaactgagcagattgaactgaccatttcacaatttgtcaaaccatttagaaaatagaagagatacataaaatgagagataaatttcaagtctatttc 33563229  T
Q  116 attttcaaagca------ttaaaaccaagctgtcaattttctcttaacaaatatgaagtctgtttg-gaaacaaaatgaagccaattacgtatcagttca 208  Q
    ||||||||||||      |||||| |||| |||||||||||||||||||||| |||  |||||| | |||||||||||||||||||||| ||||||||||    
T  33563228 attttcaaagcattaagtttaaaatcaagatgtcaattttctcttaacaaatgtgagatctgttggtgaaacaaaatgaagccaattacatatcagttca 33563129  T
Q  209 atttcata 216  Q
    ||||||||    
T  33563128 atttcata 33563121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 19810135 - 19810063
Alignment:
Q  89 aagagagataaatttcaattctgtttcattttcaaagcattaaaaccaagctgtcaattttctcttaacaaat 161  Q
    ||||||||||||||| || ||| ||| |||||| ||||||||| || | | ||||||||||||||||||||||    
T  19810135 aagagagataaatttgaagtctatttgattttccaagcattaacactatgatgtcaattttctcttaacaaat 19810063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University