View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8468_high_3 (Length: 315)
Name: NF8468_high_3
Description: NF8468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8468_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 25 - 300
Target Start/End: Original strand, 27260994 - 27261269
Alignment:
| Q |
25 |
caaccatatacatctgtatgtaattatgcactcagttatggtactaagacatttcaaattatataaactaaaatgaatataagcatttcagattatataa |
124 |
Q |
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| T |
27260994 |
caaccatatacatctgtatgtaattatgcactcagttatggtactaggacatttcaaattatataaactaaaatgaatataagcatttcagattatataa |
27261093 |
T |
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| Q |
125 |
tctgaagtgggaattttcccactccataccaaagtgtttgtttatcatggttgtagggtgcatgagaacttttactcggtgcatcttcacagagaaaccg |
224 |
Q |
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| T |
27261094 |
tttgaagtgggaattttcccactccataccaaaatgtttgtttatcatggttgtagggtgcatgaaaacttttactcggtgcaccttcacagagaaaccg |
27261193 |
T |
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| Q |
225 |
aatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcatctc |
300 |
Q |
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| T |
27261194 |
aatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttaaaaaatgattgtccaattcctctc |
27261269 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 31460415 - 31460371
Alignment:
| Q |
82 |
attatataaactaaaatgaatataagcatttcagattatataatc |
126 |
Q |
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| T |
31460415 |
attatataatccaaaatgtatataagcattttagattatataatc |
31460371 |
T |
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