View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8468_high_7 (Length: 228)

Name: NF8468_high_7
Description: NF8468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8468_high_7
NF8468_high_7
[»] chr8 (2 HSPs)
chr8 (12-211)||(38245872-38246071)
chr8 (30-182)||(24788420-24788572)
[»] chr6 (4 HSPs)
chr6 (17-169)||(19229360-19229512)
chr6 (49-170)||(29071265-29071386)
chr6 (49-170)||(29103838-29103959)
chr6 (123-182)||(12691888-12691947)
[»] chr2 (1 HSPs)
chr2 (25-196)||(38624140-38624311)
[»] chr7 (3 HSPs)
chr7 (49-186)||(13807862-13807999)
chr7 (59-113)||(13760959-13761013)
chr7 (59-148)||(26159689-26159778)
[»] chr4 (4 HSPs)
chr4 (28-120)||(18992019-18992111)
chr4 (58-150)||(41147925-41148017)
chr4 (28-186)||(3693045-3693200)
chr4 (90-146)||(7704568-7704624)
[»] chr1 (3 HSPs)
chr1 (59-182)||(14207355-14207478)
chr1 (90-168)||(46269074-46269152)
chr1 (141-186)||(39037889-39037934)
[»] scaffold0259 (1 HSPs)
scaffold0259 (30-108)||(4127-4205)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 38246071 - 38245872
Alignment:
Q  12 gagaagaacaactagatatttcaaaacacggtacccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactgg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38246071 gagaagaacaactagatatttcaaaacacggtacccactccttttactctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactag 38245972  T
Q  112 tggcttttgcttatagttatcatgaccgatggaaacaccacattctttgcatgggtgttcttctgtaatttatttatttttgtctctcaatggtgcttta 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  38245971 tggcttttgcttatagttatcatgaccggtggaaacaccacattctttgcatgggtgttcttctgtaatttatttattttcgtctctgaatggtgcttta 38245872  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 24788572 - 24788420
Alignment:
Q  30 tttcaaaacacggtacccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagtt 129  Q
    ||||| ||||||||  | ||||| ||| |||||||||||||||||||||| |||||||| |||||||||||||| |||| |||  |||||| ||||||||    
T  24788572 tttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaattcattcttatggttgaaatcgaaacaggtaacttttgtttatagtt 24788473  T
Q  130 atcatgaccgatggaaacaccacattctttgcatgggtgttcttctgtaattt 182  Q
    | || ||| | |||| ||| | ||||||||| |||| ||||||| ||||||||    
T  24788472 accacgactggtggagacaacccattctttgtatggttgttcttatgtaattt 24788420  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 19229512 - 19229360
Alignment:
Q  17 gaacaactagatatttcaaaacacggtacccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggct 116  Q
    |||||||  |||||||||||| |||||| ||||||||||  ||||| || |||||||||||||||||||||| |||||||||||||||||||  ||||||    
T  19229512 gaacaaccggatatttcaaaatacggtatccactcctttcactctcgttaaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggct 19229413  T
Q  117 tttgcttatagttatcatgaccgatggaaacaccacattctttgcatgggtgt 169  Q
    |||||||||||||| || ||||| || ||||||| |||| |||  ||||||||    
T  19229412 tttgcttatagttaccacgaccggtgaaaacaccccattttttatatgggtgt 19229360  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 29071386 - 29071265
Alignment:
Q  49 ctccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 148  Q
    |||||||| |||||||||||||||| ||  || ||| |||  | ||||||||||| |||| ||||||||||| ||||| |||||| ||  | ||||||||    
T  29071386 ctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacgattggtggaaaca 29071287  T
Q  149 ccacattctttgcatgggtgtt 170  Q
    || ||||| ||| |||| ||||    
T  29071286 ccccattcattgtatggatgtt 29071265  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 29103959 - 29103838
Alignment:
Q  49 ctccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 148  Q
    |||||||| |||||||||||||||| ||  || ||| |||  | ||||||||||| |||| ||||||||||| ||||| |||||| ||  | ||||||||    
T  29103959 ctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacgattggtggaaaca 29103860  T
Q  149 ccacattctttgcatgggtgtt 170  Q
    || ||||| ||| |||| ||||    
T  29103859 ccccattcattgtatggatgtt 29103838  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 12691947 - 12691888
Alignment:
Q  123 tatagttatcatgaccgatggaaaca-ccacattctttgcatgggtgttcttctgtaattt 182  Q
    ||||||||||||||||| |||||||| |||| | ||||| |||||||||||| ||||||||    
T  12691947 tatagttatcatgaccggtggaaacatccac-tcctttgtatgggtgttcttgtgtaattt 12691888  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 38624140 - 38624311
Alignment:
Q  25 agatatttcaaaacacggtacccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgctta 124  Q
    ||||||||||||| ||| || ||||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| |||||||    
T  38624140 agatatttcaaaatacgatatccacttcctttactctcattgaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggctcttgctta 38624239  T
Q  125 tagttatcatgaccgatggaaacaccacattctttgcatgggtgttcttctgtaatttatttatttttgtct 196  Q
    |||||| |  ||| | ||   ||||| ||||||||  ||| || ||||| |||||||||||||| |||||||    
T  38624240 tagttaccgggactggtgacgacaccccattctttatatgagtattcttttgtaatttatttatctttgtct 38624311  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 13807999 - 13807862
Alignment:
Q  49 ctccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 148  Q
    |||||| | ||||||||||| |||||||||| ||||| || |||||||||||||||||||  ||||| || |||||||||||||||||  | ||||||||    
T  13807999 ctccttcttctctcattgaacaagtaaagttaaattcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaaca 13807900  T
Q  149 ccacattctttgcatgggtgttcttctgtaatttattt 186  Q
    || ||||||||| |||||||||  | ||||||||||||    
T  13807899 cctcattctttgtatgggtgttagtttgtaatttattt 13807862  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 13760959 - 13761013
Alignment:
Q  59 tctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtg 113  Q
    ||||||||||||||| ||| | |||||||| ||||||||||||||||||| ||||    
T  13760959 tctcattgaaaaagttaagctaaattcattcttatggttgaaatcaaaacaggtg 13761013  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 26159689 - 26159778
Alignment:
Q  59 tctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaaca 148  Q
    ||||||||||||||| ||| | |||||||| || |||||||||||| |||  ||| | |||  |||||||||||||||| | ||||||||    
T  26159689 tctcattgaaaaagttaagctaaattcattcttgtggttgaaatcataacatgtgtcatttagttatagttatcatgactggtggaaaca 26159778  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 18992019 - 18992111
Alignment:
Q  28 tatttcaaaacacggtacccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttg 120  Q
    |||||||||| |||||  |||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||||| |||  |||||| ||||    
T  18992019 tatttcaaaatacggtgtccactcattttcttctcatcgaaaaagtaaagttaaattcattcttatggttgaaatctaaataggtggcctttg 18992111  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 41147925 - 41148017
Alignment:
Q  58 ctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaacacc 150  Q
    ||||||||||||| || || || |||||||| |||||||||||||| |||| |||  | |||||||||| |||||| ||  | ||||||||||    
T  41147925 ctctcattgaaaaggttaaattaaattcattcttatggttgaaatctaaacaggtcacatttgcttataattatcacgattggtggaaacacc 41148017  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 3693200 - 3693045
Alignment:
Q  28 tatttcaaaacacggtacccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatag 127  Q
    |||| |||||||||||  ||||||||| | ||||   |||||| || ||| | ||||| || |||||||||||||| || | |||||| ||   |||||     
T  3693200 tattccaaaacacggtttccactccttattctct---tgaaaaggttaaggttaattctttcttatggttgaaatctaatcaggtggcgttcaattataa 3693104  T
Q  128 ttatcatgaccgatggaaacaccacattctttgcatgggtgttcttctgtaatttattt 186  Q
     || |||||  | ||||| |||| |||| |||| ||||||| |||||||||||||||||    
T  3693103 ctaacatgattggtggaatcaccccattgtttgtatgggtggtcttctgtaatttattt 3693045  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 7704624 - 7704568
Alignment:
Q  90 ttatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaa 146  Q
    |||||||||||||||||||  |   ||||| ||||||||||||||||| ||||||||    
T  7704624 ttatggttgaaatcaaaacatgcatctttttcttatagttatcatgactgatggaaa 7704568  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 14207355 - 14207478
Alignment:
Q  59 tctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaacaccacattctt 158  Q
    |||||||||||||||||||||  |||| || || ||||||||||| |||| || |||||||||||| | |||||| ||||| |||||||||  ||| | |    
T  14207355 tctcattgaaaaagtaaagtttcattccttcttttggttgaaatctaaacaggcggcttttgcttacacttatcacgaccggtggaaacactccatccct 14207454  T
Q  159 tgcatgggtgttcttctgtaattt 182  Q
    || ||||||||  || ||||||||    
T  14207455 tgtatgggtgtatttttgtaattt 14207478  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 46269152 - 46269074
Alignment:
Q  90 ttatggttgaaatcaaaactggtggcttttgcttatagttatcatgaccgatggaaacaccacattctttgcatgggtg 168  Q
    |||||||||| ||| |||| ||||||||||||||||  |||||||||  | ||||||||||  |||| ||| |||||||    
T  46269152 ttatggttgagatctaaacaggtggcttttgcttattcttatcatgattggtggaaacaccctattcattgtatgggtg 46269074  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 39037934 - 39037889
Alignment:
Q  141 tggaaacaccacattctttgcatgggtgttcttctgtaatttattt 186  Q
    ||||| |||| ||||||||| ||||||||||||||||| |||||||    
T  39037934 tggaatcaccccattctttgaatgggtgttcttctgtagtttattt 39037889  T

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Target: scaffold0259 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 4127 - 4205
Alignment:
Q  30 tttcaaaacacggtacccactccttttcctctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaac 108  Q
    |||||||| |||||| || ||||||||  ||||||||| ||| | |||||  ||||||| |||||||||||||| ||||    
T  4127 tttcaaaatacggtatccgctccttttgttctcattgataaaattaagtttcattcattcttatggttgaaatctaaac 4205  T

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