View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8468_low_1 (Length: 914)

Name: NF8468_low_1
Description: NF8468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8468_low_1
NF8468_low_1
[»] chr1 (1 HSPs)
chr1 (17-906)||(3674163-3675055)
[»] chr3 (7 HSPs)
chr3 (526-680)||(48553545-48553699)
chr3 (273-409)||(48553771-48553910)
chr3 (273-408)||(44196276-44196414)
chr3 (273-408)||(50806447-50806585)
chr3 (273-408)||(50869292-50869430)
chr3 (526-599)||(44196483-44196556)
chr3 (44-111)||(48554300-48554367)
[»] chr2 (1 HSPs)
chr2 (531-653)||(18327485-18327607)
[»] chr6 (1 HSPs)
chr6 (526-599)||(19965817-19965890)
[»] chr4 (1 HSPs)
chr4 (535-653)||(51938673-51938791)


Alignment Details
Target: chr1 (Bit Score: 801; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 17 - 906
Target Start/End: Original strand, 3674163 - 3675055
Alignment:
Q  17 tttttccctctacttgattctgaagacttatccactacccttcttcctgtgagcaattctaatagaaccactccatagctatacacatcactctttgttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3674163 tttttccctctacttgattctgaagacttatccactacccttcttcctgtgagcaattctaatagaaccactccatagctatacacatcactctttgttg 3674262  T
Q  117 tgaggtgacctatata--atcaatcgggcaagggttaattagattnnnnnnnnnntt-cttcttcttaaccctcaaattatcagcgaaaacaaccctgat 213  Q
    ||||||||||||||||  |||||||||||||||||||||||||||          || |||| |||||||||| ||||||||||||||||||| ||||||    
T  3674263 tgaggtgacctatatataatcaatcgggcaagggttaattagattcaaatttttttttcttcgtcttaaccctaaaattatcagcgaaaacaatcctgat 3674362  T
Q  214 aatctagagttcggccaggagcagcataaaacagggttaacattttgtatggtagagtcatacctgtcatgatgtactcaggagccgcataaccatgtgt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3674363 aatctagagttcggccaggagcagcataaaacagggttaacattttgtatggtagagtcatacctgtcatgatgtactcaggagccgcataaccatgtgt 3674462  T
Q  314 tcccattacgcgtgtcgttacatgtgtctcttctccttcaggaccatccttagctagtccaaagtctgataacttagctgtataatcctggatttgatgg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3674463 tcccattacgcgtgtcgttacatgtgtctcttctccttcaggaccatccttagctagtccaaagtctgataacttagctgtataatcctggatttgatgg 3674562  T
Q  414 gagataaaaaagtccaagttaataattttctaatatggccacatggaagataattttgtagatgcaaggtgatctttgaagtttatgaataaaacagaaa 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3674563 gagataaaaaagtccaagttaataattttctaatatggccacatggaagataattttgtagatgcaaggtgatctttgaagtttatgaataaaacagaaa 3674662  T
Q  514 gggaagagaaaagaacataccgagtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3674663 gggaagagaaaagaacataccgagtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctt 3674762  T
Q  614 tagcagctcccaatgcgattttcatccttgttgaccatggcatagtagcagagtatcctgtttgtattatgttagaacatcaacctcggctcaaaag-aa 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3674763 tagcagctcccaatgcgattttcatccttgttgaccatggcatagtagcagagtatcctgtttgtattatgttagaacatcaacctcggctcaaaagaaa 3674862  T
Q  713 aaacgcaaacaaataacacacgagatttgatcagtgagacgtctacggctaccattgccgagcggatgctatacctttcaataattcaaccttaggattt 812  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  3674863 aaacgcaaacaaataacacacgagatttgatcagtgagacgtctacggctaccattaccgagcggatgctatacctttctataattcaaccttaggattt 3674962  T
Q  813 atagtgtacaaattgtgtttacatactatggtccaatttacaagattccacttatcagtaaactatgaatcatacggaacatattagaataatg 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||    
T  3674963 atagtgtacaaattgtgtttacatactatggtccaatttacaagattccacttattagtaaactatgaatcatac-aaacatattagaataatg 3675055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 526 - 680
Target Start/End: Complemental strand, 48553699 - 48553545
Alignment:
Q  526 gaacataccgagtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctccca 625  Q
    |||||||||||||| ||||| |||||||||| ||||||||| || || |||||||||||||||||||||||||| || ||||  || ||||| || || |    
T  48553699 gaacataccgagtccagtaatatatttgaagttttgaaatccctataaattacaggtttatctgcttcatgaaggaaagctagtcccttagctgcaccta 48553600  T
Q  626 atgcgattttcatccttgttgaccatggcatagtagcagagtatcctgtttgtat 680  Q
    |||| |||||||| || ||||||||||| |  |||||||||||||||| ||||||    
T  48553599 atgcaattttcattctggttgaccatggtaatgtagcagagtatcctgattgtat 48553545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 273 - 409
Target Start/End: Complemental strand, 48553910 - 48553771
Alignment:
Q  273 atacctgtcatgatgtactcaggagccgcataaccatgtgttcccattacgcgtgtcgtt---acatgtgtctcttctccttcaggaccatccttagcta 369  Q
    ||||||| |||||| ||||||||||| ||||| || | ||||||||||| || ||| |||   |||||||| |||||||||||||||||||| |||||||    
T  48553910 atacctgacatgatatactcaggagcagcatagccttttgttcccattatgcatgttgttgtcacatgtgtttcttctccttcaggaccatctttagcta 48553811  T
Q  370 gtccaaagtctgataacttagctgtataatcctggatttg 409  Q
     |||||  |||||||  |||||||| |||||||| |||||    
T  48553810 atccaagatctgatagtttagctgtgtaatcctgaatttg 48553771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 273 - 408
Target Start/End: Original strand, 44196276 - 44196414
Alignment:
Q  273 atacctgtcatgatgtactcaggagccgcataaccatgtgttcccattacgcgtgtcgtt---acatgtgtctcttctccttcaggaccatccttagcta 369  Q
    ||||||| |||||| ||||||||||| ||||| || | ||||||||||| || ||| |||   |||||||| |||||||||||||||||||| |||||||    
T  44196276 atacctgccatgatatactcaggagcagcatagccttttgttcccattatgcatgttgttgtcacatgtgtttcttctccttcaggaccatctttagcta 44196375  T
Q  370 gtccaaagtctgataacttagctgtataatcctggattt 408  Q
     ||||| ||||||||  || ||||| |||||||| ||||    
T  44196376 atccaaggtctgatagtttggctgtgtaatcctgaattt 44196414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 273 - 408
Target Start/End: Complemental strand, 50806585 - 50806447
Alignment:
Q  273 atacctgtcatgatgtactcaggagccgcataaccatgtgttcccattacgcgtgtcgtt---acatgtgtctcttctccttcaggaccatccttagcta 369  Q
    ||||||| |||||| ||||||||||| ||||| |||| ||||||||| | || ||| |||   |||||||| |||||||||||||||||||| |||||||    
T  50806585 atacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtgtttcttctccttcaggaccatctttagcta 50806486  T
Q  370 gtccaaagtctgataacttagctgtataatcctggattt 408  Q
     ||||| |||| |||  |||||||| |||||||| ||||    
T  50806485 atccaaggtctaatagtttagctgtgtaatcctgaattt 50806447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 273 - 408
Target Start/End: Original strand, 50869292 - 50869430
Alignment:
Q  273 atacctgtcatgatgtactcaggagccgcataaccatgtgttcccattacgcgtgtcgtt---acatgtgtctcttctccttcaggaccatccttagcta 369  Q
    ||||||| |||||| ||||||||||| ||||| |||| ||||||||| | || ||| |||   |||||||| |||||||||||||||||||| |||||||    
T  50869292 atacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgttgttgtcacatgtgtttcttctccttcaggaccatctttagcta 50869391  T
Q  370 gtccaaagtctgataacttagctgtataatcctggattt 408  Q
     ||||| |||| |||  |||||||| |||||||| ||||    
T  50869392 atccaaggtctaatagtttagctgtgtaatcctgaattt 50869430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 44196483 - 44196556
Alignment:
Q  526 gaacataccgagtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaag 599  Q
    |||||||||||||| ||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  44196483 gaacataccgagtccagtaatatatttgaagttttgaaatccctatatattacaagtttatctgcttcatgaag 44196556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 48554367 - 48554300
Alignment:
Q  44 ttatccactacccttcttcctgtgagcaattctaatagaaccactccatagctatacacatcactctt 111  Q
    ||||||||||||||  ||||||| |||||||| || |  || ||||||||||||||||||||||||||    
T  48554367 ttatccactaccctctttcctgtaagcaattccaacaacactactccatagctatacacatcactctt 48554300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 531 - 653
Target Start/End: Original strand, 18327485 - 18327607
Alignment:
Q  531 taccgagtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcg 630  Q
    |||||||||||  ||||| ||||||||||||||||||||  | || || ||||  || |||||||||||||| ||||| ||||| |||||||| |  ||     
T  18327485 taccgagtctaacaagatgtttgaagctttgaaatctctaaaaataactggttgctcagcttcatgaagaaaggctaaaccttttgcagctccaacagca 18327584  T
Q  631 attttcatccttgttgaccatgg 653  Q
    |||||||| ||||||||||||||    
T  18327585 attttcattcttgttgaccatgg 18327607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 526 - 599
Target Start/End: Complemental strand, 19965890 - 19965817
Alignment:
Q  526 gaacataccgagtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaag 599  Q
    |||||||||||||| ||||| |||||||||  ||||||||| || ||||||||| |||||||||||||||||||    
T  19965890 gaacataccgagtccagtaatatatttgaatttttgaaatccctatatattacaagtttatctgcttcatgaag 19965817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 535 - 653
Target Start/End: Original strand, 51938673 - 51938791
Alignment:
Q  535 gagtctagtaagatatttgaagctttgaaatctctgtatattacaggtttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgattt 634  Q
    ||||||| ||||||||||||| |||||||||||||||| || || ||||| | ||| ||||| | ||| ||||  ||||| |||||||| |  || ||||    
T  51938673 gagtctaataagatatttgaacctttgaaatctctgtagatgactggtttctttgcatcatgtaaaaaagctagaccttttgcagctccaacagcaattt 51938772  T
Q  635 tcatccttgttgaccatgg 653  Q
    |||| ||||||||||||||    
T  51938773 tcattcttgttgaccatgg 51938791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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