View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8468_low_2 (Length: 543)
Name: NF8468_low_2
Description: NF8468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8468_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 51711776 - 51711270
Alignment:
| Q |
1 |
aaattgtggtctacaactgcaatataaaagttttaagaggtttggtttctacaaatcgtatcatgtttgttactgcaattgtagtcgcatcggctgcatt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51711776 |
aaattgcggtctacaactgcaatataaaagttttaagaggtttggtttctacaaatcgtatcatgtttgttactg---------------------catt |
51711698 |
T |
|
| Q |
101 |
tgctaggattttgtcacaatatggtgatcattaatagccttttcnnnnnnnaactaattattggactattggtggaattgcagctggaaacacaggaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51711697 |
tgctaggattttgtcacaatatggtgatcattaatagccttttctttttttaactaattattggactattggtggaattgcagctggaaacacaggaact |
51711598 |
T |
|
| Q |
201 |
gtggaagagagaataaactaatatgatacttaagaagtgcaaatcttaatgctggtttcaagtgtgaagaaagtttcccttgcttccatcnnnnnnnn-g |
299 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51711597 |
gtggaagagagaataaactaatatgatacttaagaggtgcaaatcttaatgctggtttcaagtgtgaagaaagtttcccttgcttccatctttttttttg |
51711498 |
T |
|
| Q |
300 |
gtttgatttcatgtgagaaatgatagaataaccttgttactttgttagaaatatttatgtttcctttacaaaaattcaatttattgatacaatgattgta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51711497 |
gtttgatttcatgtgagaaatgatagaataaccttgttactttgttagaaatatttatgtttcctttacaaaaattcaatttattgatacaatgattgta |
51711398 |
T |
|
| Q |
400 |
ttctttatattcttctgtatttaagaactgtatctcatattattgtcctaatccttgtactttgctttctaaattctgtttacatattcaaatgtaatag |
499 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51711397 |
ttctttatatgcttctgtatttaagaactgtatctcatattattgtcctaatccttgtactttgctttctaaattctgtttacatattcaaatataatag |
51711298 |
T |
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| Q |
500 |
aacagtattagtatatagaacgtgatgt |
527 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
51711297 |
aacagtattagtatatagaacgtgatgt |
51711270 |
T |
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