View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8468_low_8 (Length: 254)
Name: NF8468_low_8
Description: NF8468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8468_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 29769653 - 29769872
Alignment:
| Q |
16 |
atactctagaagaactaactaaagatgaagttgatgttacttaccgataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccg |
115 |
Q |
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| T |
29769653 |
atactctagaagaactaactaaagatgaagttgatgttacttaccgataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccg |
29769752 |
T |
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| Q |
116 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
215 |
Q |
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| T |
29769753 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
29769852 |
T |
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| Q |
216 |
cacgagatgcagcttgaact |
235 |
Q |
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|||||||||||||||||||| |
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| T |
29769853 |
cacgagatgcagcttgaact |
29769872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 48100437 - 48100337
Alignment:
| Q |
116 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
215 |
Q |
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| T |
48100437 |
ggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaag |
48100338 |
T |
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| Q |
216 |
c |
216 |
Q |
| |
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| |
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| T |
48100337 |
c |
48100337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 48074528 - 48074379
Alignment:
| Q |
61 |
gataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccgggataatcgatgccataaggaggagagtcggcacgtgccgtggtt |
160 |
Q |
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| T |
48074528 |
gataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggtt |
48074429 |
T |
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| Q |
161 |
agcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaa |
210 |
Q |
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|| || |||||||||||| ||||||||||||| |||||||||||||| |
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| T |
48074428 |
gctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaacaaa |
48074379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 1807335 - 1807235
Alignment:
| Q |
116 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
215 |
Q |
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|||||||| || |||||||||||||| || ||||| || || || ||||||||||| || || ||| | ||||||||||| || ||||| ||||| |||| |
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| T |
1807335 |
ggataatcaattccataaggaggagaatcagcacgagcagttgtaagcaaataattgttatttccattatcaacaagtgaatctccaaatacaaaaaaag |
1807236 |
T |
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| Q |
216 |
c |
216 |
Q |
| |
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| |
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| T |
1807235 |
c |
1807235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 48091529 - 48091426
Alignment:
| Q |
116 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
215 |
Q |
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|||||||| |||||||||||||||| || || || || || ||| || ||||||||||| ||| | |||||||| || |||||||| |||||||||| |
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| T |
48091529 |
ggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaag |
48091430 |
T |
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| Q |
216 |
cacg |
219 |
Q |
| |
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|||| |
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| T |
48091429 |
cacg |
48091426 |
T |
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