View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8469_high_1 (Length: 679)

Name: NF8469_high_1
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8469_high_1
NF8469_high_1
[»] chr4 (1 HSPs)
chr4 (22-657)||(44575330-44575965)


Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 22 - 657
Target Start/End: Original strand, 44575330 - 44575965
Alignment:
Q  22 cataggatagataataatatcccaattctgattctgcatcccatgctcattcttcttgtagcccttttattgattatcctcattataggaaggtagatac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44575330 cataggatagataataatatcccaattctgattctgcatcccatgctcattcttcttgtagcccttttattgattatcctcattataggaaggtagatac 44575429  T
Q  122 actcataaatgcatatccaaaatgaaagtgatgtcattgatatcaagttcatccatcctggtggaaccttgaagtgagatccaatagacctatcagtttg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44575430 actcataaatgcatatccaaaatgaaagtgatgtcattgatatcaagttcatccatcctggtggaaccttgaagtgagatccaatagacctatcagtctg 44575529  T
Q  222 tataacttgaagcacaccaaatgtgctctgctgatccattacaatgaaacaacagattcctgtcacccatactggtagaattccaaacaagcatttcaag 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44575530 tataacttgaagcacaccaaatgtgctctgctgatccattacaatgaaacaacaaattcctgtcacccatactggtagaattccaaacaagcatttcaag 44575629  T
Q  322 tgttccacttgttgcaaactacaaagtctccaaccattcttagcaattccttggttgttcaattcacttggttcagctattatagccgccttatcaagaa 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44575630 tgttccacttgttgcaaactacaaagtctccaaccattcttagcaattccttggttgttcaattcacttggttcagctattatagccgccttatcaagaa 44575729  T
Q  422 acttgaacctgtctgtttgaacaagcctaatgttttctgattctgacaatgtagaaacatgatcatataaagttctatttgaaagctgaagtttgcgttt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44575730 acttgaacctgtctgtttgaacaagcctaatgttttctgattctgacaatgtagaaacatgatcatataaagttctatttgaaagctgaagtttgcgttt 44575829  T
Q  522 tcgacatgctgcaacgatcacctttgccatgtctgtaaaaacgctcccttgaggttttttgtaaatgtaagtgccgcgaccaaatagaaagatgattatc 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44575830 tcgacatgctgcaacgatcacctttgccatgtctgtaaaaacgctcccttgaggttttttgtaaatgtaagtgccgcgaccaaatagaaagatgattatt 44575929  T
Q  622 gagaaagcaagacaaaccgtcggaattgcaaatcct 657  Q
    ||||||||||||||||||||||||||||||||||||    
T  44575930 gagaaagcaagacaaaccgtcggaattgcaaatcct 44575965  T

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