View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_10 (Length: 390)
Name: NF8469_high_10
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 40517955 - 40518325
Alignment:
| Q |
1 |
atcacatttactaacgtctgatcaaatctcgtgtttaaccaagctagctctgctggaaggaaattcaccaaaaagagtagtaaagttttttctgttctct |
100 |
Q |
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| T |
40517955 |
atcacatttactaacgtctgatcaaatctcgtgtttaaccaagctagctctgctggaaggaaattcaccaaaaagagtagtaaagttttttttgttctct |
40518054 |
T |
|
| Q |
101 |
acttttcactaaattatcattaaattggtataccatataatatatcattggaatccctatattattggcctgcgttcactgtggcatacattgaatgcat |
200 |
Q |
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| T |
40518055 |
acttttcactaaattatcattaaattggtataccatataatatatcattggaatccctatattattggcctgcgttcactgtggcatacattgaatgcat |
40518154 |
T |
|
| Q |
201 |
caaagcgacatgtctgagaaataacaccatacatatatacaatgagaatgagttgcaccaacctttataacaaaaattgaatttggttgtatttactatt |
300 |
Q |
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| T |
40518155 |
caaagcgacatgtctgagaaataacaccatacatat-tacaatgagaatgagttgcaccaacctttataacaaaaattgaatttggttgtatttactatt |
40518253 |
T |
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| Q |
301 |
tgatcagaaaataattacaaattgaactatacacttcacgagcacataatagcaaagatcataggttactta |
372 |
Q |
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| T |
40518254 |
tgatcagaaaataattacaaattgaactatacacttcacgagcacataatagcaaagatcataggttactta |
40518325 |
T |
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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 34464625 - 34464710
Alignment:
| Q |
140 |
atatatcattggaatccctatattattggcctgcgttcactgtggcatacattgaatgcatcaaagcgacatgtctgagaaataac |
225 |
Q |
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| T |
34464625 |
atatatcattggaatccctatattattggcatgtgttcactgtgggatgcattgaaagcatcaaagcgacttgtctgcgaaataac |
34464710 |
T |
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