View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_12 (Length: 370)
Name: NF8469_high_12
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 7834781 - 7834440
Alignment:
| Q |
19 |
aagggtggatggggattttgataaaagagagaataaataggagtatggtgaggtagaggacaagatcatggggcttaaattagatatagcgacatccaat |
118 |
Q |
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| T |
7834781 |
aagggtggatgggaattttgataaaagagagaataaataggagtatggtgaggtagaggacaagatcatggggcttaaattagatattgcgacatccaat |
7834682 |
T |
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| Q |
119 |
gtgaagtgtgaagttgtatgcctatcaggaaccgaagttgaagcctgttgaagatctggaaatagggtcaacggtggtgcgaatggtgattctcatcgca |
218 |
Q |
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| T |
7834681 |
gtgaagtgtgaagttgtatgcctatcaggaaccgaagttgaagcctgttgaagatctggaaatagggtcaacggtggtgcgaatggtgattctcatcgca |
7834582 |
T |
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| Q |
219 |
ccaccattcatgtagtctacattggaaaaaatatgctttaaacttaagcggggagatgcgtccgtaaaaaggttagatgtagagaggtcaagagaaattt |
318 |
Q |
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| T |
7834581 |
ccaccactcatgtagtctacattggaaaaaatatgctttaaacttaagcggggagatgcgtccgtagaaaggttagatgtagagaggccaagagaaattt |
7834482 |
T |
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| Q |
319 |
tctggagagaaaaggagtcattaaaggttttgtatctaacacgaa |
363 |
Q |
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| T |
7834481 |
tctggagag---aggagtcattaaaagttttatatctaacacgaa |
7834440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 176 - 303
Target Start/End: Complemental strand, 7863522 - 7863395
Alignment:
| Q |
176 |
ggaaatagggtcaacggtggtgcgaatggtgattctcatcgcaccaccattcatgtagtctacattggaaaaaatatgctttaaacttaagcggggagat |
275 |
Q |
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| T |
7863522 |
ggaaatagggtcaatggtggtgcggagagtgattctcatcgcaccaccactcgtgtagtctacattggacaaaagatgctttaaatttgaggggagaggc |
7863423 |
T |
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| Q |
276 |
gcgtccgtaaaaaggttagatgtagaga |
303 |
Q |
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| T |
7863422 |
gcggacgtaaaaaggttagatgtagaga |
7863395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 7864176 - 7864132
Alignment:
| Q |
58 |
ggagtatggtgaggtagaggacaagatcatggggcttaaattagatat |
105 |
Q |
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| T |
7864176 |
ggagtatggtgaggtagaggataag---atggggcttaaattagatat |
7864132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 31051774 - 31051838
Alignment:
| Q |
176 |
ggaaatagggtcaacggtggtgcgaatggtgattctcatcgcaccaccattcatgtagtctacat |
240 |
Q |
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| T |
31051774 |
ggaaagaggctcaccggtggtgcggatagtgaatctcgtcgcaccaccactcatgtagtctacat |
31051838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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