View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8469_high_15 (Length: 343)
Name: NF8469_high_15
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 1573834 - 1574157
Alignment:
| Q |
16 |
caggttttgtctatagcattttctaagttatcatattacttgannnnnnnnnnnnnnnnnnnaaggttatttctaaaaccaataaatttcttatttgtga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1573834 |
caggttttgtctatagcattttctaagttatcatattacttgattttttgcttttttgttttaaggttatttctaaaaccaataaatttcttatttgtga |
1573933 |
T |
|
| Q |
116 |
taaaattatttgtctcaactctttcatttcctaannnnnnnnnngcagttggacatatttgctgaatttgagattgaatcattgacatctaaagaaaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1573934 |
taaaattatttgtctcaactctttcatttcctaattttttttt-gcagttggacatatttgctgaatttgagattgaatcattgacatctaaagaaaata |
1574032 |
T |
|
| Q |
216 |
ttagcaatgacaatatagattgtggaagaggttctatagatagaagtgattttggaccatttggcattctagcaattgcagatgacacactttctgaaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1574033 |
ttagcaatgacaatatagattgtggaagaggttctatagatagaagtgattttggaccatttggtattctagcaattgcacatgacacactttcagaaca |
1574132 |
T |
|
| Q |
316 |
aactccaatatatttccgcctctct |
340 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1574133 |
aactccaatatatttccgcctctct |
1574157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University