View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8469_high_16 (Length: 338)

Name: NF8469_high_16
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8469_high_16
NF8469_high_16
[»] chr4 (8 HSPs)
chr4 (18-338)||(47292445-47292765)
chr4 (200-338)||(56209616-56209755)
chr4 (206-315)||(54303383-54303492)
chr4 (276-338)||(45863436-45863499)
chr4 (276-338)||(45883384-45883447)
chr4 (18-89)||(45862523-45862594)
chr4 (206-239)||(45863240-45863273)
chr4 (206-239)||(45882639-45882672)
[»] chr8 (2 HSPs)
chr8 (201-338)||(7973526-7973664)
chr8 (18-128)||(7962561-7962669)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 47292765 - 47292445
Alignment:
Q  18 agaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttat 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292765 agaagataccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttat 47292666  T
Q  118 attcaccaagtgctacaacttctggaattacagaattgagaccacctttaaacaaggaaacaggatcagcttcaggagacgtataaacttcttcacatgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47292665 attcaccaagtgctacaacttctggaattacagaattgagaccacctttaaataaggaaacaggatcagcttcaggagacgtataaacttcttcacatgc 47292566  T
Q  218 acaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47292565 acaagcaatgtaatattcttttcctcctattgcagggacataagcaacaataagttttcctgattttctgaaattcatgatttcctttcgaatttcatga 47292466  T
Q  318 gtttagcccaaccgcaattta 338  Q
    ||||||||||||| |||||||    
T  47292465 gtttagcccaaccacaattta 47292445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 56209616 - 56209755
Alignment:
Q  200 ataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatt 299  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||| |||| || ||||||||| |||| |||||| || |||||||||||||| | ||||    
T  56209616 ataaatttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatt 56209715  T
Q  300 tcccttcgaatttcat-gagtttagcccaaccgcaattta 338  Q
    | |||||||||||||| ||||||||||||||| |||||||    
T  56209716 tgccttcgaatttcatcgagtttagcccaaccacaattta 56209755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 54303492 - 54303383
Alignment:
Q  206 ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt 305  Q
    ||||| |||||||| ||| | |||||| |||||| |||| ||| |||| ||||||||||  |||||||||||||||||||||||||| | ||||| ||||    
T  54303492 ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt 54303393  T
Q  306 cgaatttcat 315  Q
    ||||||||||    
T  54303392 cgaatttcat 54303383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 45863436 - 45863499
Alignment:
Q  276 cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaattta 338  Q
    ||||||||||||||||||| |||||  ||||||||||||| || |||||||||||| |||||||    
T  45863436 cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaattta 45863499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 45883384 - 45883447
Alignment:
Q  276 cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaattta 338  Q
    ||||||||||||||||| | ||| |  ||||||||||||| |||||||||||||||||||||||    
T  45883384 cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaattta 45883447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 45862523 - 45862594
Alignment:
Q  18 agaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttc 89  Q
    |||||| || |||||||||||||||||||| ||||| ||| | || ||||||| ||| |||| |||||||||    
T  45862523 agaagagactttatccagccaatttgaatagatattatccagtaatgcagtcagcatctcacgatgatcttc 45862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
Q  206 ttcttcacatgcacaagcaatgtaatattctttt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  45863240 ttcttcacatgcacaagcaatgtaatattatttt 45863273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
Q  206 ttcttcacatgcacaagcaatgtaatattctttt 239  Q
    |||||||||||| |||||||||||||||||||||    
T  45882639 ttcttcacatgcgcaagcaatgtaatattctttt 45882672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 201 - 338
Target Start/End: Original strand, 7973526 - 7973664
Alignment:
Q  201 taaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgattt 300  Q
    ||||||||||||||||||||| | ||||||||||||||||| || ||| |||  |||||||||||||||||||| ||||||||||||||||| |||||||    
T  7973526 taaacttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgattt 7973625  T
Q  301 cccttcgaatttcat-gagtttagcccaaccgcaattta 338  Q
    ||||| ||||||||| ||||||||| |||| ||| ||||    
T  7973626 ccctttgaatttcatcgagtttagctcaactgcatttta 7973664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 7962561 - 7962669
Alignment:
Q  18 agaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttat 117  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||||| || | |||| || ||||| |||||||| |||||  |||||| | |||    
T  7962561 agaagagaccttatccagccaatttgaataaatactgtcctgcaatgcagtcgtcgtctcacgataatctttgatttgttgacctc--ctacccatctat 7962658  T
Q  118 attcaccaagt 128  Q
    ||| |||||||    
T  7962659 atttaccaagt 7962669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University