View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_18 (Length: 329)
Name: NF8469_high_18
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 34835026 - 34834730
Alignment:
| Q |
16 |
ccacaaacagtggttgagagtcttgttgatgagagtatcaccaaaactattacatgtggaattattttggaagatggaaccacttgtagaagacaaccag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34835026 |
ccacaaacagtggttgagagtcttgttgatgagagtatcaccaaaactattacatgtggaattattttggaagatggaaccacttgtagaagacaaccag |
34834927 |
T |
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| Q |
116 |
ttaaaggaagaaaaagatgtcatgatcataaagggaagagaattcgtgcatttgttcctattaattagaaataattgatgatgaataatggacaattttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834926 |
ttaaaggaagaaaaagatgtcatgatcataaagggaagagaattcgtgcatttgttcctattaattagaaataattgatgatgaataatggacaattttt |
34834827 |
T |
|
| Q |
216 |
gcctagaccacaaatgtacttgttcaagcttataattacacataatctttgtaatacgtagttgttacttaggagataaataaaaatgttggcaatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34834826 |
gcctagaccacaaatgtacttgttcaagcttataattacacataatctatgtaatacgtagttgttactcaggagataaataaaaatgttggcaatt |
34834730 |
T |
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Back To:
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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 35336871 - 35336997
Alignment:
| Q |
39 |
tgttgatgagagtatcaccaaaactattacatgtggaattattttggaagatggaaccacttgtagaagacaaccagttaaaggaagaaaaagatgtcat |
138 |
Q |
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|||||| ||| ||||||||||||| |||| |||||||| || ||||| |||||| | ||||||||||||||||| ||||||||||||||||| || || |
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| T |
35336871 |
tgttgaggagggtatcaccaaaaccattatctgtggaatcatcttggatgatggatctacttgtagaagacaaccggttaaaggaagaaaaaggtgccag |
35336970 |
T |
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| Q |
139 |
gatcataaagggaagagaattcgtgca |
165 |
Q |
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|| |||||||||| ||||||||||||| |
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| T |
35336971 |
gaacataaagggaggagaattcgtgca |
35336997 |
T |
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