View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8469_high_20 (Length: 307)

Name: NF8469_high_20
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8469_high_20
NF8469_high_20
[»] chr4 (1 HSPs)
chr4 (13-307)||(44575943-44576237)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 44576237 - 44575943
Alignment:
Q  13 acctgtgatgataatgatagacctaattgtaaacatccaaaagattggcaactaggagttctatttacaggtcttggactattatccattggagctggtg 112  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44576237 acctgtgatgataatgataggcctaattgtcaacatccaaaagattggcaactaggagttctatttacaggtcttggactattatccattggtgctggtg 44576138  T
Q  113 gaattaggccttgcaacattgcatttggtgctgaccaatttgacaccaacacagcaaagggaaggggacaattagagagcttctttaattggtggtattt 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44576137 gaattaggccttgtaacattgcatttggtgctgaccaatttgacaccaacacagcaaagggaaggggacaattagagagcttctttaattggtggtattt 44576038  T
Q  213 cactttcaccattgcacttgttatagtgctcactggtgttgtctatattcaaactaatgtaagctggactttaggatttgcaattccgacggttt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44576037 cactttcaccattgcacttgttatagtgctcactggtgttgtctatattcaaactaatgtaagctggactttaggatttgcaattccgacggttt 44575943  T

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