View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8469_high_21 (Length: 304)

Name: NF8469_high_21
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8469_high_21
NF8469_high_21
[»] chr6 (10 HSPs)
chr6 (20-293)||(2363139-2363412)
chr6 (20-293)||(2368885-2369158)
chr6 (20-237)||(2340111-2340328)
chr6 (20-237)||(2351564-2351781)
chr6 (20-237)||(2307430-2307647)
chr6 (80-231)||(14711314-14711465)
chr6 (20-270)||(2357847-2358097)
chr6 (23-237)||(2261198-2261412)
chr6 (80-171)||(14753385-14753476)
chr6 (96-207)||(2297361-2297472)
[»] chr3 (1 HSPs)
chr3 (21-280)||(4305850-4306109)
[»] chr4 (1 HSPs)
chr4 (20-293)||(5804156-5804429)
[»] scaffold0408 (1 HSPs)
scaffold0408 (80-171)||(587-678)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 2363412 - 2363139
Alignment:
Q  20 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2363412 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 2363313  T
Q  120 atagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagt 219  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  2363312 atagctcaaaatgattacctctaaaatcaatatctttatgcgttgtaagaaacctctccggtttgaatactaatggatctgaccaaacattaggatcagt 2363213  T
Q  220 gtgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctg 293  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||    
T  2363212 gtgaatcttccaaagattcaaaattaatcgtgttccatttcttacatcatatccacctaaattacaattctctg 2363139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 2369158 - 2368885
Alignment:
Q  20 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||| || ||||||||||||||||||||||||||||    
T  2369158 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattccagggcaaatccttctaccacctccaaatggta 2369059  T
Q  120 atagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagt 219  Q
    ||||||||||||||| |||||||| |||||| |||||||| || ||||||||||  || ||||||||| | |||||||  ||||||| ||| ||||||||    
T  2369058 atagctcaaaatgatgacctctaacatcaacgtctttatgggtagtaagaaaccgctctggtttgaattccaatggatttgaccaaatatttggatcagt 2368959  T
Q  220 gtgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctg 293  Q
    ||||||||| | ||||||||||||||| |||||||| ||| ||||||||||| || ||||| ||||||||||||    
T  2368958 gtgaatctttctaagattcaaaattaaccgtgttccttttcttacatcatatccatctaaattgcaattctctg 2368885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 2340328 - 2340111
Alignment:
Q  20 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 119  Q
    ||||| ||||||||||||||||||||||| |  || ||||||||||||||||| || || |||||||| |||||  |||||||||||| |||||||||||    
T  2340328 aagatatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttccttctaccacttccaaatggta 2340229  T
Q  120 atagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagt 219  Q
    |||| ||||||||||||||||||| ||||||| ||||||| || |||| ||||||||| ||||||||  |||||||||| | ||||||| | ||||| ||    
T  2340228 atagttcaaaatgattacctctaacatcaacagctttatgagtggtaaaaaacctttctggtttgaactctaatggatctggccaaacactaggatctgt 2340129  T
Q  220 gtgaatcttccaaagatt 237  Q
     |||||||||||||||||    
T  2340128 ttgaatcttccaaagatt 2340111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 2351781 - 2351564
Alignment:
Q  20 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 119  Q
    ||||| |||||||||||||||||||| || | ||| |||||||  |||||||| || || |||||| | |||||  |||||||||||| |||||||||||    
T  2351781 aagatatcaaaggaatgcaaaaaacttgctagagtgaaatgcacaatttgaagtccaaaagatattgcaggacacttccttctaccacttccaaatggta 2351682  T
Q  120 atagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagt 219  Q
     ||| ||||||||||||||||||| ||||||| ||||||| || |||||||||||||| ||||||||  |||||||||| ||||||||| | ||||||||    
T  2351681 gtagttcaaaatgattacctctaacatcaacaactttatgagtggtaagaaacctttctggtttgaactctaatggatctgaccaaacactaggatcagt 2351582  T
Q  220 gtgaatcttccaaagatt 237  Q
     |||||||||||||||||    
T  2351581 ttgaatcttccaaagatt 2351564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 2307647 - 2307430
Alignment:
Q  20 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 119  Q
    ||||| ||||||||||||||||||||||| | | | ||||||||||||||||| || | ||||||||| || || ||||||||||||| ||||||||| |    
T  2307647 aagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatccttctaccacttccaaatggca 2307548  T
Q  120 atagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagt 219  Q
    ||||| |||||| | |||| |||| ||||||||||||||| || |||||||| ||||| ||||||||  |||||||||| | ||||| ||| ||||| ||    
T  2307547 atagcacaaaattactacccctaacatcaacatctttatgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatattaggatccgt 2307448  T
Q  220 gtgaatcttccaaagatt 237  Q
    || |||| ||||||||||    
T  2307447 gttaatcctccaaagatt 2307430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 14711314 - 14711465
Alignment:
Q  80 gatattccgggacaaatccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccg 179  Q
    |||||||| ||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| || || |    
T  14711314 gatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaacatcaacatctttatgagttgtaagaaatctctcag 14711413  T
Q  180 gtttgaatactaatggatccgaccaaacattgggatcagtgtgaatcttcca 231  Q
    |||||||  | |||||||||| ||||||| | |||||||| || ||||||||    
T  14711414 gtttgaactccaatggatccggccaaacactaggatcagtttggatcttcca 14711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 2358097 - 2357847
Alignment:
Q  20 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 119  Q
    ||||||||||| |||||||||||| |||||||| ||||||||| |||||  || || || |||||| | ||||||||||||||||||| |||||||||||    
T  2358097 aagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatatttcaggacaaatccttctaccacttccaaatggta 2357998  T
Q  120 atagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagt 219  Q
    | | |||||| |||   |||| || ||||||||||||||  ||  ||||||| ||||| ||||| ||   |||||||||||||||||||||  | || ||    
T  2357997 acaactcaaagtgacaccctcgaacatcaacatctttataagtgttaagaaatctttctggtttaaactttaatggatccgaccaaacattatggtctgt 2357898  T
Q  220 gtgaatcttccaaagattcaaaattaatcgtgttccattttttacatcata 270  Q
     || || ||||||||||| || |||| ||| ||||| ||| | ||||||||    
T  2357897 ttggattttccaaagatttaagattagtcgagttccttttatgacatcata 2357847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 2261198 - 2261412
Alignment:
Q  23 atttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggtaata 122  Q
    ||||||||||| || |||||| |||||||||||||||| | ||| ||||| || || |||||||| ||||| ||||||||||||| |||||||||||| |    
T  2261198 atttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaaca 2261297  T
Q  123 gctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagtgtg 222  Q
     ||||||||| | |||  |   |||||||| ||| || || |||||||| ||||| ||||||||  |||||||||| | ||||| | | ||||| || ||    
T  2261298 actcaaaatgttgacccttggcatcaacatttttgtgagtggtaagaaatctttctggtttgaactctaatggatctggccaaatacttggatcggtttg 2261397  T
Q  223 aatcttccaaagatt 237  Q
    ||| |||||||||||    
T  2261398 aattttccaaagatt 2261412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 14753385 - 14753476
Alignment:
Q  80 gatattccgggacaaatccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaa 171  Q
    |||||||| |||||||||||||| |||| |||||||||||| | ||||||||||| |||  ||| ||||||||||||||| |||||||||||    
T  14753385 gatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaa 14753476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 2297472 - 2297361
Alignment:
Q  96 tccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatgg 195  Q
    ||||||| |||| ||||||||| || | ||||||||  | ||| | || |||||||||||| |  || |||||||||||||| ||||| ||| |||||||    
T  2297472 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgttagtggtaagaaacctttcaggtttaaattctaatgg 2297373  T
Q  196 atccgaccaaac 207  Q
    ||| ||||||||    
T  2297372 atctgaccaaac 2297361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 4306109 - 4305850
Alignment:
Q  21 agatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggtaa 120  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||  | |||||||| ||||||||||||||||||| ||||||||||||    
T  4306109 agatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatttgaaggccataagatattcctggacaaatccttctaccacttccaaatggtaa 4306010  T
Q  121 tagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagtg 220  Q
    || ||||||||||| |||  ||| ||||||| ||||||| || |||||||||| ||| ||||||||  |||| || ||  ||||||| || ||||||||     
T  4306009 taactcaaaatgatgacccttaacatcaacacctttatgagtagtaagaaaccgttctggtttgaactctaaaggttctaaccaaaccttaggatcagta 4305910  T
Q  221 tgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaa 280  Q
    || |||||||| |||||||  |||| ||  ||||| ||||| ||||||||  ||||||||    
T  4305909 tggatcttccatagattcatgattagtctagttccttttttgacatcataaccacctaaa 4305850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 5804156 - 5804429
Alignment:
Q  20 aagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatccttctaccacctccaaatggta 119  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||| ||||||||| || ||  ||||||| |||||  |||||||||||| ||||||||||     
T  5804156 aagatatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatattccaggacatttccttctaccacttccaaatggtt 5804255  T
Q  120 atagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaacctttccggtttgaatactaatggatccgaccaaacattgggatcagt 219  Q
     ||| |||||||||||||| |||| ||||| ||||||||| ||||||||||||||||| || || ||  |||||||||  | ||||||| |  |||| ||    
T  5804256 gtagttcaaaatgattacccctaacatcaatatctttatgagttgtaagaaacctttctggcttaaaatctaatggatttggccaaacactaagatctgt 5804355  T
Q  220 gtgaatcttccaaagattcaaaattaatcgtgttccattttttacatcatattcacctaaactgcaattctctg 293  Q
     || ||||||||||||||    |||||||| ||||| ||| | |||| |||  |||||||| ||||||||||||    
T  5804356 ttggatcttccaaagatttgtgattaatcgagttccttttgtaacatgataaccacctaaagtgcaattctctg 5804429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 678 - 587
Alignment:
Q  80 gatattccgggacaaatccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaacatctttatgcgttgtaagaaa 171  Q
    |||||||| |||||||||||||| |||| |||||||||||| | ||||||||||| |||  ||| ||||||||||||||| |||||||||||    
T  678 gatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaa 587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University