View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_23 (Length: 276)
Name: NF8469_high_23
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 34774547 - 34774807
Alignment:
| Q |
1 |
tcctttggattccaacaccattcgtagtacaaacacggcgacatggggatacgatccaaagaccaactccacgataacacctttatctcatccacaatct |
100 |
Q |
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| T |
34774547 |
tcctttggattccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatct |
34774646 |
T |
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| Q |
101 |
cgaccacctccgtaataagattattaaagactcgatcatttctagctttccatagcacccaaatcgtagtgtgccaaataagccttaaaccattacgagt |
200 |
Q |
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|| |||||| ||||| |||||||||| ||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||| |
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| T |
34774647 |
cgcccacctatgtaatttgattattaaatactcgattattcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagt |
34774746 |
T |
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| Q |
201 |
tctcttattcctctcccctccgcactaactcttccaaaggataaaaaggttagggggaatt |
261 |
Q |
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||||||||||||||||||||||||| ||| || ||||||||| || | ||||||||||||| |
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| T |
34774747 |
tctcttattcctctcccctccgcaccaacactcccaaaggatgaagaagttagggggaatt |
34774807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 35024426 - 35024686
Alignment:
| Q |
1 |
tcctttggattccaacaccattcgtagtacaaacacggcgacatggggatacgatccaaagaccaactccacgataacacctttatctcatccacaatct |
100 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35024426 |
tcctttggattccaacatcattcatagtacaaacacggcgacataaggatacgatccaaagaccaacgccacgataacacctttatctcatccacaatct |
35024525 |
T |
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| Q |
101 |
cgaccacctccgtaataagattattaaagactcgatcatttctagctttccatagcacccaaatcgtagtgtgccaaataagccttaaaccattacgagt |
200 |
Q |
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| T |
35024526 |
cgcccacctccgtaatttgattattaaatactcgattattcctagctttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagt |
35024625 |
T |
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| Q |
201 |
tctcttattcctctcccctccgcactaactcttccaaaggataaaaaggttagggggaatt |
261 |
Q |
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|||||||||||||||||||||| || ||| || ||||||||| || | ||||||||||||| |
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| T |
35024626 |
tctcttattcctctcccctccgaaccaacactcccaaaggatgaagaagttagggggaatt |
35024686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 30656342 - 30656386
Alignment:
| Q |
135 |
atcatttctagctttccatagcacccaaatcgtagtgtgccaaat |
179 |
Q |
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| T |
30656342 |
atcatttctcgctttccacaagacccaaatcgtagtgtgccaaat |
30656386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 42748733 - 42748993
Alignment:
| Q |
1 |
tcctttggattccaacaccattcgtagtacaaacacggcgacatggggatacgatccaaagaccaactccacgataacacctttatctcatccacaatct |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
42748733 |
tcctttggattccaacaccattcatagtacaaacacggcgatataagaatacgatccaaagaccaacgccacgatatcacctttatctcatccacaatct |
42748832 |
T |
|
| Q |
101 |
cgaccacctccgtaataagattattaaagactcgatcatttctagctttccatagcacccaaatcgtagtgtgccaaataagccttaaaccattacgagt |
200 |
Q |
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|| ||||||||||||| |||||||||| ||||||| ||| ||||||||||||| |||||||||||| || ||||||||||||||||| || ||||||| |
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| T |
42748833 |
cgcccacctccgtaattcgattattaaatactcgattattcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagt |
42748932 |
T |
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| Q |
201 |
tctcttattcctctcccctccgcactaactcttccaaaggataaaaaggttagggggaatt |
261 |
Q |
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||||||||||||||||||||||| | ||| || |||||| || || | ||||||||||||| |
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| T |
42748933 |
tctcttattcctctcccctccgctccaacactcccaaagaatgaagaagttagggggaatt |
42748993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 38553146 - 38553102
Alignment:
| Q |
135 |
atcatttctagctttccatagcacccaaatcgtagtgtgccaaat |
179 |
Q |
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|||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
38553146 |
atcattcctagctttccacaacacccaaatcgtagtgtgccaaat |
38553102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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