View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_26 (Length: 271)
Name: NF8469_high_26
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_26 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 24941026 - 24941272
Alignment:
| Q |
18 |
ttgagttcaggccagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggc |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24941026 |
ttgagttcaggccagagaggtttatgagtgaggaagataataagttcgatgcgaggggacaaaatttccaacttatgccatttggaagtggtagaagggc |
24941125 |
T |
|
| Q |
118 |
ttgccctggtgccactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24941126 |
ttgccctggtgccactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaac |
24941225 |
T |
|
| Q |
218 |
atggaagagaaaccggcggtgacccttccaagggctcatcctttgat |
264 |
Q |
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|||||||||||| | || || |||||||||||||||||||||||||| |
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| T |
24941226 |
atggaagagaaatccgctgtaacccttccaagggctcatcctttgat |
24941272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 25169462 - 25169708
Alignment:
| Q |
18 |
ttgagttcaggccagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggc |
117 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| ||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
25169462 |
ttgagttcaggccagagaggtttatgtgtgaagaaaataacaagttcgatatgagggggcaaaatttccaacttatgccatttggaactggtagaagggc |
25169561 |
T |
|
| Q |
118 |
ttgccctggtgccactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaac |
217 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25169562 |
ttgccctggttacttattagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttgac |
25169661 |
T |
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| Q |
218 |
atggaagagaaaccggcggtgacccttccaagggctcatcctttgat |
264 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25169662 |
atggaagagaaaccggccgtgacccttccaagggctcatcctttgat |
25169708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 38807707 - 38807610
Alignment:
| Q |
56 |
aataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgttcc |
153 |
Q |
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|||||||| |||||||||||||||||||||||| |||| |||||||||| ||| ||||| ||||||||||||| | | |||||||||||||||||||| |
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| T |
38807707 |
aataagttagatgtgaggggacaaaatttccaatttataccatttggaactggaagaagagcttgccctggtgtctcattagcacttcaagttgttcc |
38807610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 19823 - 20055
Alignment:
| Q |
29 |
ccagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtg |
128 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || ||| |||||||||||| |
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| T |
19823 |
ccagagaggtttatgagtgaagag---aataagtttgatgtgaggggacaaaatttccaatttatgccatttggaactggaaggaggtcttgccctggtg |
19919 |
T |
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| Q |
129 |
ccactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaa |
228 |
Q |
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| | ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||| |
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| T |
19920 |
cttcattagcacttcaggctgttccgacaaatcttgccgcaatgattcagtgttttgaatggaaggttggtggtaatggaaaagttaacatggatgagaa |
20019 |
T |
|
| Q |
229 |
accggcggtgacccttccaagggctcatcctttgat |
264 |
Q |
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| |||| || |||||||||||||||||||||||| |
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| T |
20020 |
agcggccacgagccttccaagggctcatcctttgat |
20055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 12040 - 12269
Alignment:
| Q |
32 |
gagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgcca |
131 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||| |||||| |||||| |
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| T |
12040 |
gagaggtttatgagtgaagag---aataagtttgatgtgaggggacaaaatttccaacttatgccattcggaactggaagacggggttgccccggtgcct |
12136 |
T |
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| Q |
132 |
ctttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaacc |
231 |
Q |
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| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||| | ||||||||||||||||||||| |
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| T |
12137 |
cattagcacttcaagctgttccaacaaatcttgctgcaatgattcagtgttttgaatggaaagttggtggtgatggaacagttaacatggaagagaaacc |
12236 |
T |
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| Q |
232 |
ggcggtgacccttccaagggctcatcctttgat |
264 |
Q |
| |
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| |||||||||||||||||||||||||| |
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| T |
12237 |
ttcaaccacccttccaagggctcatcctttgat |
12269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 25672 - 25904
Alignment:
| Q |
29 |
ccagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtg |
128 |
Q |
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|||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||| ||||||||| ||| ||||| ||||| |||||| |
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| T |
25672 |
ccagagaggtttatgagtgaaggg---aataagtttgatctaaggggacaaaatttccaatttataccatttggatttggaagaagagcttgtcctggta |
25768 |
T |
|
| Q |
129 |
ccactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaa |
228 |
Q |
| |
|
|| | || || |||||||||||||| |||||||||||||| || |||||||||||||||| ||| |||| ||||||||| | ||||| |||||||||||| |
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|
| T |
25769 |
cctcattcgcgcttcaagttgttccaacaaatcttgctgctattattcagtgttttgaattgaaggttggtggtaatggaacagttagcatggaagagaa |
25868 |
T |
|
| Q |
229 |
accggcggtgacccttccaagggctcatcctttgat |
264 |
Q |
| |
|
| | || ||||||||||||||||||||||||||| |
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| T |
25869 |
agcttcgacgacccttccaagggctcatcctttgat |
25904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 9819 - 9578
Alignment:
| Q |
20 |
gagttcaggccagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggctt |
119 |
Q |
| |
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||||||| ||| ||||||||||||||||||| |||||||||||| | | |||||| ||||| ||| |||||||||||||| ||| |||||||||| |
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| T |
9819 |
gagttcaagccggagaggtttatgagtgaaggg---aataagtttgattttaagggacagaatttgcaatatatgccatttggaactggaagaagggctt |
9723 |
T |
|
| Q |
120 |
gccctggtgccactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacat |
219 |
Q |
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|||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||| |||||| | ||||| ||| |||| |||| | ||||||||| |
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| T |
9722 |
gccctggtgcttcattagcacttcaagctgttccaacaaatcttgctgcaatgattcaatgtttttattggaaggttagtggtgatggaacagttaacat |
9623 |
T |
|
| Q |
220 |
ggaagagaaaccggcggtgacccttccaagggctcatcctttgat |
264 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||||||||||| |
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| T |
9622 |
ggaagagaaaccagctttgacccttcctagggctcatcctttgat |
9578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 36735471 - 36735580
Alignment:
| Q |
155 |
acaaatcttgctgcaatgattcagtgttttgaatggaatgttga---tggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaaggg |
251 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||| |||||||||||||| | | |||||||| |||||| |
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| T |
36735471 |
acaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaaggg |
36735570 |
T |
|
| Q |
252 |
ctcatccttt |
261 |
Q |
| |
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|||||||||| |
|
|
| T |
36735571 |
ctcatccttt |
36735580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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