View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_33 (Length: 249)
Name: NF8469_high_33
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 6838212 - 6837991
Alignment:
| Q |
19 |
tgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatttgtgatagctgaaagccagtatttaacctttgatcccaacatatcc |
118 |
Q |
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| T |
6838212 |
tgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggattagtgatagctgaaagcaagtatttaacctttgatcccaacatatcc |
6838113 |
T |
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| Q |
119 |
ttgctcttgagttttacatttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagagtatcaaaccatttcttcacacgttggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |
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| T |
6838112 |
ttgctcttgagttttacatttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagattatcaaaccacttcttcacattttggt |
6838013 |
T |
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| Q |
219 |
tatggtacttctttgtctctgc |
240 |
Q |
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| T |
6838012 |
tttggtacttctttgtctctgc |
6837991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 8472359 - 8472482
Alignment:
| Q |
117 |
ccttgctcttgagttttacatttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagagtatcaaaccatttcttcacacgttg |
216 |
Q |
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| T |
8472359 |
ccttgctctttcgttgtacacttgtatcaaactcatccaacaattgatctacttcatatacctcatgttttagacgatcaagccaattcttaacattttg |
8472458 |
T |
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| Q |
217 |
gttatggtacttctttgtctctgc |
240 |
Q |
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||| |||||||||||||||||||| |
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| T |
8472459 |
gttctggtacttctttgtctctgc |
8472482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 5250887 - 5250954
Alignment:
| Q |
19 |
tgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatttgtgatagctgaaa |
86 |
Q |
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| T |
5250887 |
tgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaa |
5250954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 5268774 - 5268832
Alignment:
| Q |
19 |
tgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatttgtga |
77 |
Q |
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| T |
5268774 |
tgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtga |
5268832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 4388228 - 4388195
Alignment:
| Q |
39 |
ctagcaactctttgatcctagattcaaatggatt |
72 |
Q |
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| T |
4388228 |
ctagcaattctttgatcctagattcaaatggatt |
4388195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 6448072 - 6448040
Alignment:
| Q |
40 |
tagcaactctttgatcctagattcaaatggatt |
72 |
Q |
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| T |
6448072 |
tagcaagtctttgatcctagattcaaatggatt |
6448040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 6572506 - 6572403
Alignment:
| Q |
137 |
tttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagagtatcaaaccatttcttcacacgttggttatggtacttctttgtct |
236 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| | |||| ||||||| ||||||| |
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| T |
6572506 |
tttgtagcaatctcatccaacaattgatctacttcatatacctcatgttttagacgatcaagccaaatcttcacgtttgggttttggtactgttttgtct |
6572407 |
T |
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| Q |
237 |
ctgc |
240 |
Q |
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|||| |
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| T |
6572406 |
ctgc |
6572403 |
T |
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