View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_35 (Length: 244)
Name: NF8469_high_35
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41987921 - 41988158
Alignment:
| Q |
1 |
cgtggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987921 |
cgtggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaa |
41988020 |
T |
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| Q |
101 |
aatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacataatgataaaccatactagtctctcttcccttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41988021 |
aatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacctaatgataaaccatactagtctctcttccc--- |
41988117 |
T |
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| Q |
201 |
tttctttcttgtgaaccatcgtcaaaattctagtttcttctc |
242 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||| |
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| T |
41988118 |
-ttctttcttgtgaaccatcgccaaaactctagtttcttctc |
41988158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 1220592 - 1220355
Alignment:
| Q |
1 |
cgtggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaa |
100 |
Q |
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||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220592 |
cgtggcaagaatagctacaaagtacaacacatatgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaa |
1220493 |
T |
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| Q |
101 |
aatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacataatgataaaccatactagtctctcttcccttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1220492 |
aatcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcatcgaatgataaaccatactagtctctcttcccttc |
1220393 |
T |
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| Q |
201 |
tttctttcttgtgaaccatcgtcaaaattctagtttcttctc |
242 |
Q |
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|| ||||||||||||||||||||| |||| ||||||||| |
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| T |
1220392 |
tt----tcttgtgaaccatcgtcaaaactctaatttcttctc |
1220355 |
T |
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