View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_36 (Length: 241)
Name: NF8469_high_36
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 41987679 - 41987463
Alignment:
| Q |
3 |
aaaatttgtcacttatatcgtgaagcaaatacttgtgttcatgcttaatttagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
102 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987679 |
aaaatttgtcacttatatcgtgaagcaaatacttatgttcatgctt----tagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
41987584 |
T |
|
| Q |
103 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggcttaggatctttttta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987583 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggcttaggatctttttta |
41987484 |
T |
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| Q |
203 |
ttgcgaatcgaatagacatag |
223 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
41987483 |
ttgcgaatcgaataaacatag |
41987463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 1220834 - 1221050
Alignment:
| Q |
3 |
aaaatttgtcacttatatcgtgaagcaaatacttgtgttcatgcttaatttagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
102 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220834 |
aaaatttgtcacttatatggtgaagcaaatacttgtgttcatgctt----tagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
1220929 |
T |
|
| Q |
103 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggcttaggatctttttta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220930 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggcttaggatctttttta |
1221029 |
T |
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| Q |
203 |
ttgcgaatcgaatagacatag |
223 |
Q |
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|||||||||||||| |||||| |
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| T |
1221030 |
ttgcgaatcgaataaacatag |
1221050 |
T |
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Back To:
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