View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8469_high_4 (Length: 451)

Name: NF8469_high_4
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8469_high_4
NF8469_high_4
[»] chr7 (2 HSPs)
chr7 (19-433)||(44501302-44501716)
chr7 (206-294)||(32413624-32413712)
[»] chr3 (12 HSPs)
chr3 (183-388)||(45870386-45870593)
chr3 (201-388)||(20994965-20995154)
chr3 (201-388)||(20981806-20981995)
chr3 (324-379)||(20977477-20977532)
chr3 (185-397)||(45856777-45856991)
chr3 (324-403)||(2996371-2996450)
chr3 (239-294)||(25601740-25601795)
chr3 (324-383)||(20949493-20949552)
chr3 (204-262)||(778229-778287)
chr3 (327-397)||(20948805-20948875)
chr3 (206-287)||(25596902-25596983)
chr3 (329-397)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (183-391)||(3978077-3978287)
[»] chr5 (3 HSPs)
chr5 (197-380)||(7894982-7895166)
chr5 (183-413)||(38142015-38142247)
chr5 (183-235)||(7976853-7976905)
[»] chr6 (7 HSPs)
chr6 (185-295)||(33844279-33844389)
chr6 (237-294)||(33840288-33840345)
chr6 (206-294)||(7115536-7115624)
chr6 (206-294)||(7120608-7120696)
chr6 (206-294)||(7124012-7124100)
chr6 (206-262)||(7140758-7140814)
chr6 (206-262)||(8680372-8680428)
[»] chr2 (1 HSPs)
chr2 (207-295)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 44501716 - 44501302
Alignment:
Q  19 aataactcgccgtagatttattcaataacttttaatgcaaaaatataattttgttatgtttttgttccatgattaggttcttatcagaatgtcaagtgag 118  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44501716 aataactcgccgtagatttgctcaataacttttaatgcaaaaatataattctgttatgtttttgttccatgattaggtacttatcagaatgtcaagtgag 44501617  T
Q  119 ataataattcgaccgacaaagaagaaattaaaactcactgagagtgtaagtaaagactgacttggcgacttacctgactgcattatccttcacatactgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44501616 ataataattcgaccgacaaagaagaaattaaaactcactgagagtgtaagtaaagaccgacttggcgacttacctgactgcattatccttcacatactgt 44501517  T
Q  219 cttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcacttatagcattcttcagatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501516 cttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcacttatagcattcttcagatt 44501417  T
Q  319 ttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttcagccataatggtcg 418  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44501416 ttcacactttcaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttcagccataatggttg 44501317  T
Q  419 cttggagtttcacct 433  Q
    |||||||||||||||    
T  44501316 cttggagtttcacct 44501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 32413624 - 32413712
Alignment:
Q  206 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 294  Q
    ||||||||||| || | ||||||  ||||| |||| ||||| ||||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  32413624 cttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 388
Target Start/End: Complemental strand, 45870593 - 45870386
Alignment:
Q  183 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 282  Q
    ||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| |||| ||||| |||||| |||| || || ||||  | |||||||||    
T  45870593 gcgacctacctgactgtgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatctttg 45870494  T
Q  283 gaaacgtcttcctgcacttata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctct 380  Q
    ||||||||||||| | ||||||  |||||||   || ||||  ||||| ||||||||||  | ||| || |||| |||||||||||| |  |||||||||    
T  45870493 gaaacgtcttccttctcttatattgcattctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgggattcctct 45870394  T
Q  381 atctcact 388  Q
    ||||||||    
T  45870393 atctcact 45870386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 388
Target Start/End: Complemental strand, 20995154 - 20994965
Alignment:
Q  201 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 300  Q
    ||||||||||||| || || ||| ||||  ||||| |||||||||| |||||  |||| ||||| | ||  |||||||||||||||||||||||||| ||    
T  20995154 ttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcctgctct 20995055  T
Q  301 t--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcact 388  Q
    |  || ||||  |  ||| ||||  |||| |||||||||||  | ||||||||||||| ||||||||||||  |||||||||||||||||    
T  20995054 tacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 20994965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 388
Target Start/End: Complemental strand, 20981995 - 20981806
Alignment:
Q  201 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 300  Q
    ||||||||||||| || || ||| ||||  ||||| | |||||||| |||||  |||| ||||| | ||  || ||||||||||||||||||||||| ||    
T  20981995 ttatccttcacattctctcctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcctgctct 20981896  T
Q  301 tata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcact 388  Q
    || |  ||||  |  ||| ||||  | || |||||||||||  | ||||||||||||| ||||||||||||  |||||||||||||||||    
T  20981895 tacattgcataatagagactttcgtaatttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 20981806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 20977477 - 20977532
Alignment:
Q  324 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctc 379  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||    
T  20977477 acttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctc 20977532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 397
Target Start/End: Complemental strand, 45856991 - 45856777
Alignment:
Q  185 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 284  Q
    ||||||| |||||  |||||||| ||||||||||||||| |||| || ||| |||| |||   ||||||||||||||||| ||||  |||||||| ||||    
T  45856991 gacttacatgactatattatcctccacatactgtcttttctgaacgctaaagacgcggttggaacttgcattttgtccccaagatacaaggatctctgga 45856892  T
Q  285 aacgtcttcctgcactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctat 382  Q
    |||  |||||    |||  || |  ||| |  || ||||  |||| |||||||||||  || || ||||||||||||||||||||||  |||||||||||    
T  45856891 aacaacttccaaatcttacattgtgttcctatgactttcgaactttcaagatattcaccaactttgtgtctaaggttttatctcttcgtgattcctctat 45856792  T
Q  383 ctcactacacactct 397  Q
    | |||| ||| ||||    
T  45856791 cgcactccacgctct 45856777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 2996450 - 2996371
Alignment:
Q  324 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaattt 403  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||  |||||||||||| ||| | || |||||| ||||    
T  2996450 acttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctatttcattgcagactctcgattt 2996371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 25601740 - 25601795
Alignment:
Q  239 gctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 294  Q
    |||||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||    
T  25601740 gctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 25601795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 383
Target Start/End: Original strand, 20949493 - 20949552
Alignment:
Q  324 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatc 383  Q
    ||||||||||||||||  ||||||||||||||  |||||||||||   ||||||||||||    
T  20949493 acttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatc 20949552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 778287 - 778229
Alignment:
Q  204 tccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 262  Q
    ||||||||||||| ||||||||||| |||||| | || || || |||||||||||||||    
T  778287 tccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtcc 778229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 20948805 - 20948875
Alignment:
Q  327 tacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct 397  Q
    |||||||||||||  || || ||||||||| ||||||||||||  ||| |||||||| || ||||||||||    
T  20948805 tacaagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactct 20948875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 25596902 - 25596983
Alignment:
Q  206 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaac 287  Q
    ||||||||  |||| ||||||||| ||||  | || ||||| ||||||||||||||  | ||||||||| ||||||||||||    
T  25596902 cttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaac 25596983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 45881873 - 45881805
Alignment:
Q  329 caagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct 397  Q
    |||||||||||  ||||| ||||| ||||||||||||||    |||||||||||| |||| ||||||||    
T  45881873 caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactct 45881805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 391
Target Start/End: Original strand, 3978077 - 3978287
Alignment:
Q  183 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 282  Q
    |||||||||||||  ||||||| ||||||||||| || ||||| ||  ||||  |||| ||||| |||||| |||| ||| | ||||  |||||||||||    
T  3978077 gcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagatataaggatctttg 3978176  T
Q  283 gaaacgtcttcctgcactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctct 380  Q
    ||||||||||||| | |||  || |||||||||||| |||    ||||||||| |||||  | ||| |||||||| ||||||| ||||| ||||||||||    
T  3978177 gaaacgtcttcctactcttacattgcattcttcagactttggagcttacaagaaattcaccagattagtgtctaaagttttatttcttcgcgattcctct 3978276  T
Q  381 atctcactaca 391  Q
    ||| |||||||    
T  3978277 atcgcactaca 3978287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 380
Target Start/End: Original strand, 7894982 - 7895166
Alignment:
Q  197 tgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctg 296  Q
    ||||||||||||||||| || || ||||||||||||||| | || ||||| ||||||||||||||   |||||||||| |||| ||||||| ||| || |    
T  7894982 tgcattatccttcacattctttcctttttgaatgccaaacaagccgttca-acttgcattttgtctatcagatggaagaatctctggaaacttctacccg 7895080  T
Q  297 cactt--atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctct 380  Q
    | |||  ||   ||||| |||||||||    ||||| || |||||  ||||| |||||||||||||||||||||| | ||||||||    
T  7895081 ctcttagattcgattctacagattttcgattttacacgaaattcacaaaatttgtgtctaaggttttatctcttcgcaattcctct 7895166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 413
Target Start/End: Complemental strand, 38142247 - 38142015
Alignment:
Q  183 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 282  Q
    ||||||||||||||||  |||||||||||||||| || |||||||| || ||| | || |||   ||||  ||| |||||   ||||||| |||||| ||    
T  38142247 gcgacttacctgactgtgttatccttcacatactctcctttttgaacgctaaacaggcagttacaacttcaattctgtccttaagatggagggatctatg 38142148  T
Q  283 gaaacgtcttcctgcacttata--gcattcttcagattttcacact-tacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctc 379  Q
    ||||| ||||||||| ||||||  | |||||||||| ||||  ||| |||  ||||||||| |||||||||  || ||||||| ||||||  ||||||||    
T  38142147 gaaacttcttcctgctcttatattggattcttcagactttcgaactatacc-gatattcaacaaattcgtgcatagggttttaactcttcgtgattcctc 38142049  T
Q  380 tatctcactacacactctcaatttcagccataat 413  Q
    | || ||||  || ||||||||||||| ||||||    
T  38142048 tctcgcactgaactctctcaatttcagacataat 38142015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 7976905 - 7976853
Alignment:
Q  183 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaa 235  Q
    |||||||||| || ||||||||||||||||| || || |||||||| ||||||    
T  7976905 gcgacttacccgaatgcattatccttcacattctctcctttttgaacgccaaa 7976853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 295
Target Start/End: Complemental strand, 33844389 - 33844279
Alignment:
Q  185 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 284  Q
    |||||||| ||||||||| |  || ||||  |||| ||||||||  || ||||||| ||||| ||||||||||||||| ||||||||||  |||| ||||    
T  33844389 gacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccagatggaaacatctctgga 33844290  T
Q  285 aacgtcttcct 295  Q
    ||||| |||||    
T  33844289 aacgtattcct 33844279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 33840345 - 33840288
Alignment:
Q  237 acgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 294  Q
    |||||||||  ||||||||||||||| ||||||||||  |||||||||||||| ||||    
T  33840345 acgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 33840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 7115624 - 7115536
Alignment:
Q  206 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 294  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7115536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 7120696 - 7120608
Alignment:
Q  206 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 294  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7120608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 7124100 - 7124012
Alignment:
Q  206 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 294  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7124012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 7140814 - 7140758
Alignment:
Q  206 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 262  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 7140758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 8680428 - 8680372
Alignment:
Q  206 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 262  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 8680372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 43864136 - 43864048
Alignment:
Q  207 ttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcct 295  Q
    ||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||   |||||||   ||||||||||  ||||||||    
T  43864136 ttcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcct 43864048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University