View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_40 (Length: 227)
Name: NF8469_high_40
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 47292444 - 47292305
Alignment:
| Q |
1 |
aacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtg |
100 |
Q |
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| T |
47292444 |
aacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtg |
47292345 |
T |
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| Q |
101 |
ctcaggtatctggccgctcaaatcaatttgcaagacgctg |
140 |
Q |
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| T |
47292344 |
ctcagatatctggccgctcaaatcaatttgcaagacgctg |
47292305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 47291991 - 47291918
Alignment:
| Q |
148 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac |
221 |
Q |
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| T |
47291991 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac |
47291918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 47288472 - 47288412
Alignment:
| Q |
156 |
tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttagggtttct |
215 |
Q |
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| T |
47288472 |
tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttagggcttct |
47288412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 56209779 - 56209838
Alignment:
| Q |
24 |
gcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat |
83 |
Q |
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| T |
56209779 |
gcagaaatacgatgatcataagctgctttcaacatattatcgcaaaattgaggcagagat |
56209838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 45883459 - 45883518
Alignment:
| Q |
12 |
tgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatt |
71 |
Q |
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| T |
45883459 |
tgaagatacacaccagaaatacgaggatcataagctgctttcaacaaattatcgcaaatt |
45883518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 45863523 - 45863579
Alignment:
| Q |
24 |
gcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcaga |
80 |
Q |
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| T |
45863523 |
gcagaaatacgaggatcataagctgctttcaacaaattatctcaaatttggggcaga |
45863579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7973683 - 7973742
Alignment:
| Q |
19 |
acactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggca |
78 |
Q |
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| T |
7973683 |
acacagcagaaatacgaggatcataagcggctttcaacaaattctcgcaaatttgaggca |
7973742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
| Q |
27 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct |
90 |
Q |
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| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
35803647 |
T |
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