View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_high_42 (Length: 219)
Name: NF8469_high_42
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 40276599 - 40276787
Alignment:
| Q |
13 |
agaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgt |
112 |
Q |
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| T |
40276599 |
agaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgt |
40276698 |
T |
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| Q |
113 |
gattcacctgtctctgatactaccatccaactcttcacgaccattacagtaccctttcgtcgacaccctcctctcattgctgtcgttac |
201 |
Q |
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| T |
40276699 |
gattcacctgtctctgatactaccatccaactcttcaccaccattacagtaccctttcgtcgacaccctcctctcattgctgtcgttac |
40276787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 39625351 - 39625453
Alignment:
| Q |
45 |
ctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatactaccatccaact |
144 |
Q |
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| T |
39625351 |
ctctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaact |
39625450 |
T |
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| Q |
145 |
ctt |
147 |
Q |
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||| |
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| T |
39625451 |
ctt |
39625453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 39634901 - 39635003
Alignment:
| Q |
45 |
ctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatactaccatccaact |
144 |
Q |
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||||||||||||| | |||||| ||||||||| ||||||||||||||||||| ||||| || || |||||||||||||| || |||||||||||||||| |
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| T |
39634901 |
ctctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaact |
39635000 |
T |
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| Q |
145 |
ctt |
147 |
Q |
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||| |
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| T |
39635001 |
ctt |
39635003 |
T |
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