View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_12 (Length: 371)
Name: NF8469_low_12
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 38 - 355
Target Start/End: Original strand, 35090340 - 35090655
Alignment:
| Q |
38 |
acctagattaaatgacaactagtattaaacaattattccacaaaatggatccatatagcgacacaagattactacccaggttcttaacttcattcacaaa |
137 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35090340 |
acctagattaaatgacaactagtattatacaattattccacaaaatggatccatatagcgacacaagattactacccaggttcttaacttcattcacaaa |
35090439 |
T |
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| Q |
138 |
atgctcatcttttatgtagttttgtcattgaacctcttactgcaacactacgtccatcatacagttttcctggacaagaaatatcgtataacnnnnnnnt |
237 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35090440 |
atgctcatcttttatgcagttttgtcactgaacctcttactgcaacactacgtccatcatacagttttcctggacaagaaatatcgtataacaaaaaaat |
35090539 |
T |
|
| Q |
238 |
ctttgttaagactagtgaa---agtnnnnnnnttcatcctgtcattgcggccactttatataagttacgttgttagaaatcggaatactcacatctcatg |
334 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35090540 |
ctttgttaagactagtgaaagtagtaaaaaaattcatcctgtcattgcggccagtttatataa-----gttgttagaaatcggaatactcacatctcatg |
35090634 |
T |
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| Q |
335 |
acttttatcataatacacttt |
355 |
Q |
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||||||||||||||||||||| |
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| T |
35090635 |
acttttatcataatacacttt |
35090655 |
T |
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