View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_23 (Length: 278)
Name: NF8469_low_23
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_23 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 275
Target Start/End: Complemental strand, 2591665 - 2591411
Alignment:
| Q |
26 |
tgttttcctttttactgaaattaaaaacaatgatgaaatggttataagaaaatatatatgttaagtcttttgatatgaataaaatttagccacacctgaa |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591665 |
tgttttcctttttactgaaattaaaaacaatgatgaaatagttataagaaaatatatatgttaagtcttttgatatgaataaaatttagccacacctgaa |
2591566 |
T |
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| Q |
126 |
ac-----ccttgatccgcccctgtctagaatattcttcatttggtcttgaaaatttcatttgacgttatttatccttagtcttgctagcatttgaagatg |
220 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591565 |
acaaaacccttgatccgcccctgtctagaatattcttcatttggtcttgaaaatttcatttgacgttatttatccttagtcttgctagcatttgaagatg |
2591466 |
T |
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| Q |
221 |
acacttttttatttcttgaatcttcatctgatttgtcttttttcttatcatggtt |
275 |
Q |
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| T |
2591465 |
acacttttttatttcttgaatcttcatctgatttgtcttttttcttatcatggtt |
2591411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 278
Target Start/End: Complemental strand, 10301823 - 10301571
Alignment:
| Q |
33 |
ctttttactgaaattaaaaacaatgatgaaatggttataagaaaatatatatgttaagtcttttgatatgaataaaatttagccacacctgaaac----- |
127 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10301823 |
ctttttactaaaattaaaaacaatgatgaaataattataagaaaatatttatgttaagtcttttgatatgaataaaatttagccacacctgaaacaaaac |
10301724 |
T |
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| Q |
128 |
--ccttgatccgcccctgtctagaatattcttcatttggtcttgaaaatttcatttgacgttatttatccttagtcttgctagcatttgaagatgacact |
225 |
Q |
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||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10301723 |
accctcgatctgcccctgtctagaatcttcttcatttggtcttgaaaatttcatttgatgttatttatccttagtcttgctagcatttgaagatgacact |
10301624 |
T |
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| Q |
226 |
tttttatttcttgaatcttcatctgatttgtcttttttcttatcatggttgtc |
278 |
Q |
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| T |
10301623 |
tttttatttcttgaatcttcatctgatttgtcttttttcttatcatggttgtc |
10301571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 26 - 278
Target Start/End: Complemental strand, 22224405 - 22224147
Alignment:
| Q |
26 |
tgttttcctttttactgaaattaaaaacaatgatgaaatggttataagaaaatatatatgttaagtcttttgatatgaataaaatttagccacacctgaa |
125 |
Q |
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|||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22224405 |
tgtttttctgtttactgaaattaaaaataatgatgaaatagttataagaaaatatatatgttaagtattttgatatgaataaaatttagccacacctgaa |
22224306 |
T |
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| Q |
126 |
ac------ccttgatccgcccctgtctagaatattcttcatttggtcttgaaaatttcatttgacgttatttatccttagtcttgctagcatttgaagat |
219 |
Q |
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|| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22224305 |
acaaaactcctcgatcttcccctgtctagaatcttcttcatttggtcttgaaaatttcatttgacgttatttatccttggtcttgctagcatttgaagat |
22224206 |
T |
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| Q |
220 |
gacacttttttatttcttgaatcttcatctgatttgtcttttttcttatcatggttgtc |
278 |
Q |
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| T |
22224205 |
gacacttttttatttcttgaatcttcatctgatttgtcttttttcttatcatggttgtc |
22224147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 42841317 - 42841247
Alignment:
| Q |
48 |
aaaaacaatgatgaaatggttataagaaaatatatatgttaagtcttttgatatg-aataaaatttagcca |
117 |
Q |
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|||||||||||| |||| |||||||||||||||||||| || |||||||||||| ||||||||||||||| |
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| T |
42841317 |
aaaaacaatgatcaaatagttataagaaaatatatatggcaaatcttttgatatgaaataaaatttagcca |
42841247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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