View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_25 (Length: 275)
Name: NF8469_low_25
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 27034415 - 27034272
Alignment:
| Q |
100 |
gctcaaacagattttggacctacatgtataaacatggacgaggttctcatttctcaagcaattaagtccttctcaatgaatgtactatttgtttgacata |
199 |
Q |
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| T |
27034415 |
gctcaaacagattttggacctacatgtataaacatggacgaggttctcatttctcaagcaat---------------gaatgtactatt-gtttgacata |
27034332 |
T |
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| Q |
200 |
aataaatgcacttgttgtcgggtccacagcttgagctagaccagtgataaaccgataata |
259 |
Q |
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| T |
27034331 |
aataaatacacttgttgtcgggtccacagcttgagctagaccagtgataaactgataata |
27034272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 27034460 - 27034408
Alignment:
| Q |
10 |
gacatcatatacactgtttttctcctacttatgtgatttttatttgctcaaac |
62 |
Q |
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| T |
27034460 |
gacatcatatacactgtttttctcctacttatgtgatttttatttgctcaaac |
27034408 |
T |
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