View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_3 (Length: 530)
Name: NF8469_low_3
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Original strand, 51114173 - 51114683
Alignment:
| Q |
18 |
gtttgttgtttacggatttacttatatgagaaattaatttattttataaatgtcaacttacatatatgtatttagttacggatataacttatttatccct |
117 |
Q |
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| T |
51114173 |
gtttgttgattacggatttacttatatgagaaattaatttattttataaatgtcaacttacatatatgtatttagttacggatttaacttatttatccct |
51114272 |
T |
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| Q |
118 |
tttattatattatacgctagactagatgtttttattnnnnnnnnnnnnnn--atggtcttctttggttggaattggaaaggtaacaatttagttaagcat |
215 |
Q |
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| T |
51114273 |
tttattatattatatgctagactagatgtttttatttgtgtgtgtgtgagtgatggtcttctttggttggaattggaaaggtaacaatttagttaagcat |
51114372 |
T |
|
| Q |
216 |
tcaagctcggtttttattttgattcaacttgcaagctgtaaattttggctatggtttggtgttaatattattctagtacaaatttaattcttgattatct |
315 |
Q |
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| T |
51114373 |
tcaagctcggtttttattttgattcaacttgcaagctgtaaattttggctatggtttggtgttaatattattctagtacaaatttaattcttgattatct |
51114472 |
T |
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| Q |
316 |
ctttcnnnnnnnagatatctgagaaaatattctgctaattattcatgtccattggtgtttgaaccttatttatgtgttggattagaagttagatagaatg |
415 |
Q |
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| T |
51114473 |
ctttctttttttagatatctgagaaaatattctgcaaattattcatgtccattggtgtttgaaccttatttatttgttggattagaagttagatagaatg |
51114572 |
T |
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| Q |
416 |
catgcttgaaa----------tgtagttcatttcacacggcaaataaggtacaaaacaaaatgaaacctacattaaaatgtgacatcggagtgtgttctt |
505 |
Q |
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| T |
51114573 |
catgcttgaaatgtgtatgtctgtagttcatttcacacggcaaataagatacaaaacaaaatgaaacctacattaaaatgtgacatcggagtgtgttctt |
51114672 |
T |
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| Q |
506 |
ctcaagtctct |
516 |
Q |
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| T |
51114673 |
ctcaagtctct |
51114683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 546450 - 546367
Alignment:
| Q |
169 |
tggtcttctttggttggaattggaaaggtaacaatttagttaagcattcaagctcggtttttattttgattcaacttgcaagct |
252 |
Q |
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| T |
546450 |
tggtcttctttagaaagaattggaaaggaaacaatttagtttagcagtcaagcttgatctttattttgattcaacttgcaagct |
546367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 552621 - 552568
Alignment:
| Q |
264 |
ctatggtttggtgttaatattattctagtacaaatttaattcttgattatctctttc |
320 |
Q |
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| T |
552621 |
ctatggtttggtgttaatattattc---tgcaaatttaattcttgattgtctctttc |
552568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 1553995 - 1554033
Alignment:
| Q |
171 |
gtcttctttggttggaattggaaaggtaacaatttagtt |
209 |
Q |
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| T |
1553995 |
gtcttctttggttggaattggaaagattacaatttagtt |
1554033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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